PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P34180_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Dof
Protein Properties Length: 332aa    MW: 35696.3 Da    PI: 9.061
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P34180_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.24.4e-39106165362
                 zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                            e+ lkcprCdstntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+++
  GSMUA_Achr6P34180_001 106 EHPLKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRNK 165
                            6789*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-3088158IPR003851Zinc finger, Dof-type
PfamPF027011.5E-32107163IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.739109163IPR003851Zinc finger, Dof-type
PROSITE patternPS013610111147IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MDFSSAPVYM DPPNWNQVSA NTTFFFFPFE LLIHWLLHQK SKLKGEDIRV LFLISSRIYH  60
SGGEAPLLPP GLAGPPPEAG AAAAGSSRPL SMTERARVAK IVQLPEHPLK CPRCDSTNTK  120
FCYFNNYSLS QPRHFCKTCR RYWTRGGALR NVPVGGGCRR NKRNKSSGSS SKSTATASTA  180
DRQDGTSSSS CMATGAGGAI PPSIPQPGQL PFLASMHGLA DYDASNLGLN FPGLPPMDAP  240
DYHVGSNSSV GIEQWRLPQI QQLHLLGGSE PPQPPAVQLM PGLFHVNREG ERDSTAGRVF  300
PKLSGSSLIT QLSGDWATDL SAFNSSSSGN VL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269|PubMed:12887587}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:12887587}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0995953e-46FP099595.1 Phyllostachys edulis cDNA clone: bphylf055n22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018682966.10.0PREDICTED: LOW QUALITY PROTEIN: dof zinc finger protein DOF3.6-like
SwissprotQ9M2U13e-48DOF36_ARATH; Dof zinc finger protein DOF3.6
TrEMBLM0TCL10.0M0TCL1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P34180_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48932961
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.19e-41OBF-binding protein 3