PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P19120_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bHLH

Protein Properties

Length: 505aa MW: 55664.4 Da PI: 7.4989

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P19120_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.5	0.00013	399	431	17	54
HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ L++l+ + +K + a++L +A+eYIk L GSMUA_Achr6P19120_001 399 GDRVTALQQLVSPF-----GKTDTASVLHEAIEYIKFL 431 55666677777776.....8****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.63E-5	378	436	No hit	No description
PROSITE profile	PS50888	12.131	382	431	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.54E-11	392	451	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.5E-8	392	451	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 505 aa Download sequence Send to blast
MFLLIHLLFY QAELEPKLPQ WHRRKKLLLS HFVTSNNPGS QLDINSSTQY GDNAHQICIC 60 QANGRGNNSI HKTPSYHQLL SWYISCGQYI NMCVETLHSS ELAPAHSTGS THHHKKLYIM 120 AGQHTKPRKT CQCEAAEEKS SMADQFQAGS CSDGSWWNTA RTGGPMIPAS VSCSTEITSS 180 GGSFHWPAVG DVFEAKSRSR DESPVSISNS SITFQDLQNS HGSAPVITTP PAMDFGLSSP 240 TADWSQPFFC SSMNGSSFLH DHHVLSSKIN SMPLLSASGG LPSALLQDLL EPDSRLERSL 300 HDAQVMKNKS SIDYHEQLLP PKQQTHFSDK TPFWDPSESS VTEAHSSYCN NPFAKANSGV 360 GVSFPTLEKK AGSEPAGKKP RIEKQSPLPT FKVRKEKLGD RVTALQQLVS PFGKTDTASV 420 LHEAIEYIKF LHDQVRVSSA PYLTNSQQMQ QVNATKSLDK TKDCEGQHQD LRSRGLCLVP 480 ISSTFAVANE IPTDLWSTTF IGTFR

Sequence ? help Back to Top

Protein Sequence Length: 505 aa Download sequence Send to blast

MFLLIHLLFY QAELEPKLPQ WHRRKKLLLS HFVTSNNPGS QLDINSSTQY GDNAHQICIC  60
QANGRGNNSI HKTPSYHQLL SWYISCGQYI NMCVETLHSS ELAPAHSTGS THHHKKLYIM  120
AGQHTKPRKT CQCEAAEEKS SMADQFQAGS CSDGSWWNTA RTGGPMIPAS VSCSTEITSS  180
GGSFHWPAVG DVFEAKSRSR DESPVSISNS SITFQDLQNS HGSAPVITTP PAMDFGLSSP  240
TADWSQPFFC SSMNGSSFLH DHHVLSSKIN SMPLLSASGG LPSALLQDLL EPDSRLERSL  300
HDAQVMKNKS SIDYHEQLLP PKQQTHFSDK TPFWDPSESS VTEAHSSYCN NPFAKANSGV  360
GVSFPTLEKK AGSEPAGKKP RIEKQSPLPT FKVRKEKLGD RVTALQQLVS PFGKTDTASV  420
LHEAIEYIKF LHDQVRVSSA PYLTNSQQMQ QVNATKSLDK TKDCEGQHQD LRSRGLCLVP  480
ISSTFAVANE IPTDLWSTTF IGTFR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC226032	9e-60	AC226032.1 Musa acuminata clone BAC MA4-12B6, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009405008.1	0.0	PREDICTED: transcription factor bHLH112-like
TrEMBL	M0T8B0	0.0	M0T8B0_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P19120_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2216	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.3	1e-45	bHLH family protein