PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr6P08060_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | bHLH | ||||||||
Protein Properties | Length: 379aa MW: 39552.8 Da PI: 4.5987 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 21.7 | 3.6e-07 | 341 | 365 | 7 | 30 |
HHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 7 erErrRRdriNsafeeLrellPk.a 30 ++ErrRR+++N+++ Lr+++Pk + GSMUA_Achr6P08060_001 341 MAERRRRKKLNDRLYMLRSVVPKiS 365 79********************955 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.22E-7 | 332 | 370 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 8.873 | 334 | 379 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-4 | 340 | 365 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.35E-6 | 341 | 367 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.5E-6 | 341 | 366 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MLSRINGVVW SEEGGDEEDA ASWTRASAPG ASGGAMGQSK DELGLPSFKS MLDDDWYLGG 60 VAAASNALPS ADAQHPFEAF QTHQDVAFSS SAKPHEALLL PPVDELDQNQ PFFPAKSALS 120 SLFGAVCSNP FDAGLDLGCD APAFLGAPHM SHSTNLMNRS GSGGDGVLGF GGMGADDQLG 180 CADLSPGADF SGGRLLPPSD TCSGSISGGT FGPMGFDSFE NSPLLNRSKV LRPLEIFPPV 240 GAQPTLFQKR AAAALRQNSG SALEEENEKK RNGNEDDEID DGSMDASGLN YDTDDAAGES 300 AKGEENAKDG GGGSNSMANS TVTGGGDHKG KKKGLPAKNL MAERRRRKKL NDRLYMLRSV 360 VPKISKVKNL TPVSSWLLP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 330 | 348 | KKKGLPAKNLMAERRRRKK |
2 | 342 | 349 | ERRRRKKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009403789.1 | 0.0 | PREDICTED: transcription factor ICE1-like isoform X2 | ||||
Refseq | XP_018682378.1 | 0.0 | PREDICTED: transcription factor ICE1-like isoform X1 | ||||
TrEMBL | M0T555 | 0.0 | M0T555_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P08060_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1646 | 37 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26744.4 | 5e-33 | bHLH family protein |