PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P08060_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 379aa    MW: 39552.8 Da    PI: 4.5987
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P08060_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.73.6e-07341365730
                            HHHHHHHHHHHHHHHHHHCTSCC.C CS
                    HLH   7 erErrRRdriNsafeeLrellPk.a 30 
                            ++ErrRR+++N+++  Lr+++Pk +
  GSMUA_Achr6P08060_001 341 MAERRRRKKLNDRLYMLRSVVPKiS 365
                            79********************955 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-7332370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508888.873334379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-4340365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.35E-6341367No hitNo description
Gene3DG3DSA:4.10.280.103.5E-6341366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MLSRINGVVW SEEGGDEEDA ASWTRASAPG ASGGAMGQSK DELGLPSFKS MLDDDWYLGG  60
VAAASNALPS ADAQHPFEAF QTHQDVAFSS SAKPHEALLL PPVDELDQNQ PFFPAKSALS  120
SLFGAVCSNP FDAGLDLGCD APAFLGAPHM SHSTNLMNRS GSGGDGVLGF GGMGADDQLG  180
CADLSPGADF SGGRLLPPSD TCSGSISGGT FGPMGFDSFE NSPLLNRSKV LRPLEIFPPV  240
GAQPTLFQKR AAAALRQNSG SALEEENEKK RNGNEDDEID DGSMDASGLN YDTDDAAGES  300
AKGEENAKDG GGGSNSMANS TVTGGGDHKG KKKGLPAKNL MAERRRRKKL NDRLYMLRSV  360
VPKISKVKNL TPVSSWLLP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1330348KKKGLPAKNLMAERRRRKK
2342349ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009403789.10.0PREDICTED: transcription factor ICE1-like isoform X2
RefseqXP_018682378.10.0PREDICTED: transcription factor ICE1-like isoform X1
TrEMBLM0T5550.0M0T555_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P08060_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164637101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.45e-33bHLH family protein