PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr6P02700_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ZF-HD | ||||||||
Protein Properties | Length: 238aa MW: 25661.6 Da PI: 9.193 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 104.9 | 5.2e-33 | 38 | 93 | 3 | 57 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57 ++ Y+eClkNhAaslGgha+DGCgEfm s++++ +++++l+CaACgCHRnFHRr GSMUA_Achr6P02700_001 38 EFLYRECLKNHAASLGGHALDGCGEFMLSPTADpADPTSLRCAACGCHRNFHRRLA 93 689******************************9*******************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 4.9E-27 | 39 | 91 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.3E-29 | 41 | 91 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 8.0E-22 | 41 | 91 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.803 | 41 | 92 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 4.0E-16 | 117 | 182 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.5E-28 | 120 | 183 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.1E-22 | 124 | 180 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MDQATKVAEA EGKGKGFGFP NGALRKHHHR PPAPAEAEFL YRECLKNHAA SLGGHALDGC 60 GEFMLSPTAD PADPTSLRCA ACGCHRNFHR RLADPPSHRH RRGEDRRPAG LPGSPGTIPA 120 AQPRKRFRTK FSPEQKGRMQ ELSERLGWRM QKRDEGLVEE CCREIGVDKG VFKVWMHNNK 180 HTFLGLARRG DPASRSARSE GGIGGGDVSQ PEGSGHANGA DEGDGGHGHV VNGSLSSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 3e-18 | 124 | 182 | 17 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009381426.1 | 1e-101 | PREDICTED: zinc-finger homeodomain protein 9-like | ||||
Swissprot | Q9LXG0 | 4e-54 | ZHD8_ARATH; Zinc-finger homeodomain protein 8 | ||||
TrEMBL | M0T3L8 | 1e-173 | M0T3L8_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P02700_001 | 1e-173 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3646 | 33 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15210.1 | 2e-56 | homeobox protein 30 |
Publications ? help Back to Top | |||
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