PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P29110_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Dof
Protein Properties Length: 340aa    MW: 36079.4 Da    PI: 9.1494
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P29110_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.24.2e-39102161261
                 zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                            +++ lkcprCdstntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk++
  GSMUA_Achr5P29110_001 102 PDQPLKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRN 161
                            7899*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-3686160IPR003851Zinc finger, Dof-type
PfamPF027011.0E-32103160IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.739106160IPR003851Zinc finger, Dof-type
PROSITE patternPS013610108144IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MVFPSVPVYL DPPNWNQEKI FMSLSLALLE YTVKYTLDLF SLYWHVQQQQ LQLPDAAGGG  60
GEIPQLLPGL AAQRPEAGMA AAGSPRPMSM TERARLAKIP QPDQPLKCPR CDSTNTKFCY  120
FNNYSLSQPR HFCKTCRRYW TRGGALRNVP VGGGCRRNKR NKPSGSSSKS TAADRQAGAS  180
SSSSTAAGGG GPIPPSIPQP GHFPFLASTM HALADYGASN LGLNFTGIPT IDAVDYQAGS  240
SSTQAPSVQP LSGLHHFNGD SGNNRITSRV LPTVSGSSLI SQLASVKMED NSQGLNLARQ  300
YPGLPGNEHY WISGEGGSTG SGGWATDLSG FNSSSSGNIL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155162RRNKRNKP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009402261.10.0PREDICTED: dof zinc finger protein DOF5.1-like
TrEMBLM0T2N50.0M0T2N5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P29110_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48932961
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.32e-50OBF-binding protein 3