PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P27850_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 270aa    MW: 29469.9 Da    PI: 6.5267
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P27850_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.42.7e-21106155255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            +++GVr+++ +grW+AeIrdp+    rkr++lg+f+taeeAa+ ++aa+ kl+g
  GSMUA_Achr5P27850_001 106 RFRGVRRRP-WGRWAAEIRDPTL---RKRVWLGTFDTAEEAAAVYDAAAMKLKG 155
                            79*******.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381235.1E-6217255IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000181.49E-20105164No hitNo description
SMARTSM003808.0E-35106169IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-22106164IPR016177DNA-binding domain
PfamPF008471.8E-13106155IPR001471AP2/ERF domain
PROSITE profilePS5103224.276106163IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.8E-30106164IPR001471AP2/ERF domain
PRINTSPR003671.8E-10107118IPR001471AP2/ERF domain
PRINTSPR003671.8E-10129145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MNPTAVVRGN RGAAALDAPL KFSEHVASSR KTAPAAASSR RRRVVRIHCT DVDATDSSSS  60
DDEEDAGPTC RRVKRHVQEI GIEAAPRRAP PERPPAAATD PCGWKRFRGV RRRPWGRWAA  120
EIRDPTLRKR VWLGTFDTAE EAAAVYDAAA MKLKGAKAVT NFPVMKTVTV DSSESSCARD  180
DVSDNPFPSP TSVLRNNADQ TPFDFLGYGE VDAFGLRVDP PLYITDFYLP HRPSVEAAGD  240
GFSEFDADDF MLEVVTLESF SSPAKTSAVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-19105174470ATERF1
3gcc_A9e-19105174470ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009402416.10.0PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
TrEMBLM0T2B00.0M0T2B0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P27850_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15640615
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61630.14e-11cytokinin response factor 6