PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P26200_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bZIP
Protein Properties Length: 406aa    MW: 45508.9 Da    PI: 8.6619
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P26200_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_137.45.6e-1292122333
                            XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
                 bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLee 33 
                            ++k+ rr+++NReAAr+sR+RKka++++Le 
  GSMUA_Achr5P26200_001  92 DDKALRRLAQNREAARKSRLRKKAYVQQLES 122
                            58999************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.4E-590158IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.9192134IPR004827Basic-leucine zipper domain
PfamPF001701.5E-894123IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.47E-794130No hitNo description
Gene3DG3DSA:1.20.5.1706.7E-894136No hitNo description
PROSITE patternPS00036097112IPR004827Basic-leucine zipper domain
PfamPF141442.4E-30178252IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MIHQQIPRQV NTLSARSFDP GSAQNYGCHV GSDSPDNSKD SSGELADRKQ QQEMMMSSTV  60
SRTGETRNPQ PSSQEKRTMT GSTTAKDGKV LDDKALRRLA QNREAARKSR LRKKAYVQQL  120
ESSKVRLQQI EHDLDRARSQ GLFLAAAGST GISSFLATGA ALFDMEYARW LAERCKLMSV  180
LRNALQAHPP EGNLGVLVDE CIRHYDELFQ LKATVAKADV FHLLNGTWKT PAERCFLWMG  240
GFKPSELLNI LIPKLDPLEQ QLVWICNLKH SSEQAEEALS LGLGHLHLSL TQIIAGRSLC  300
DGIGDGEYMN LMAAALGKLV DFEEFVSQAD NLRRQTLHNL RRHLTIRLAA RCFLAIGEYY  360
TRLRALSSIL TSRSPRESLI ADDTVVPTTT DLQIVHRPLQ HHFYNF
Functional Description ? help Back to Top
Source Description
UniProtRequired for the formation of the blade-sheath boundary in leaves. Promotes flowering. {ECO:0000269|PubMed:9490265}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018682027.10.0PREDICTED: transcription factor TGAL5-like isoform X3
RefseqXP_018682028.10.0PREDICTED: transcription factor TGAL5-like isoform X3
RefseqXP_018682029.10.0PREDICTED: transcription factor TGAL5-like isoform X3
RefseqXP_018682030.10.0PREDICTED: transcription factor TGAL5-like isoform X3
SwissprotO490671e-141LG2_MAIZE; Transcription factor LG2
TrEMBLM0T1U50.0M0T1U5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P26200_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38093166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.21e-121bZIP family protein
Publications ? help Back to Top
  1. Walsh J,Freeling M
    The liguleless2 gene of maize functions during the transition from the vegetative to the reproductive shoot apex.
    Plant J., 1999. 19(4): p. 489-95
    [PMID:10504571]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]