PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr5P22250_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

SBP

Protein Properties

Length: 977aa MW: 108920 Da PI: 8.1635

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr5P22250_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.1	8.2e-41	121	198	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+adls+ak+yhrrhkvCe+hsk++++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ GSMUA_Achr5P22250_001 121 MCQVDDCRADLSSAKDYHRRHKVCEMHSKTAKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 198 6**************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.8E-33	117	183	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.915	119	196	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.09E-37	120	199	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	7.3E-30	122	195	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	2.95E-6	768	863	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	4.20E-6	771	867	No hit	No description
Gene3D	G3DSA:1.25.40.20	9.2E-5	783	861	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 977 aa Download sequence Send to blast
MEGEVGAQVA PPIFFHHRQA LPGPFHETPL LLKKRDFPWK NNPSFQHNQQ QDSRQRLMGA 60 SLPDPSGNWN PKMWDWDSER FDDQNLALKL GGRAYSADEP TTRPSKRVRS GSPGSGCNYP 120 MCQVDDCRAD LSSAKDYHRR HKVCEMHSKT AKALVGKQMQ RFCQQCSRFH PLSEFDEGKR 180 SCRRRLAGHN RRRRKTQPED ASSRLLLPRN QQNMTNGSLD IVNLFAMLAH LQGNNQVKPT 240 SIHPLPDRDC LVQLISKLSA SNNANPSARS SVPEGFDLNV SQVPAQASFG QSPKANGDEN 300 SPSKMNLLAV LSAALAASTP DAATSLSQGS KLGSATKYLS SESSNPMEER SPSSSPPVTK 360 KLFPLHSTMD MVKYSQASEC QEDKATVDLS SSHGGIAPLV LFKESETRVV NGTIQNLPYR 420 VGYKSSGSDH SPSSSNSDTQ DRTGRIIFKL FGKDPGSFPE TLRAQVLNWL SNSPSEMESY 480 IRPGCVVLSI YLSMPSIAWN ALEDNLLQRV TSLVQDSETE FWRSGRFLIR TNRQLVSHKD 540 GKIRLSKTWR AWSAPELMCV SPVAVVGGQE TSLALKGRNL TVPGTKIHCT YMGKYMSKEV 600 LCSAYPGTIY DDSCVERFDF LGGSPNVYGR FFIEVENGFK GNSFPVIIAD DSICQELRAL 660 ESDFEEDVQT PDAIPEEEVH NSVRPRSRED ALHFLNELGW LFQRTQASCS PLFADFSSTR 720 LKYLLTFSVE RDWCALIKTL LDILVERSLR NDTIKQESLK MLSEVELLNR AVKRKCRKMV 780 DLLLHYCVSH GQDVTKVYLF TPNMSGPGGI TPLHMAASMQ DSEDMVDALT NDPQEIGLKC 840 WNSLLDDNDQ SPFMYAMLRN NLSYNRLVER KLADRANDQV TILVEGGEIS IDGSWVGGSN 900 RHGAQNSQLR SCAQCALVGT ARLRRNARSK GLLQRPYVHS LLAIAAVCVC VCVFFRGAPQ 960 IGSIEPFKWE NLDFGPR

Sequence ? help Back to Top

Protein Sequence Length: 977 aa Download sequence Send to blast

MEGEVGAQVA PPIFFHHRQA LPGPFHETPL LLKKRDFPWK NNPSFQHNQQ QDSRQRLMGA  60
SLPDPSGNWN PKMWDWDSER FDDQNLALKL GGRAYSADEP TTRPSKRVRS GSPGSGCNYP  120
MCQVDDCRAD LSSAKDYHRR HKVCEMHSKT AKALVGKQMQ RFCQQCSRFH PLSEFDEGKR  180
SCRRRLAGHN RRRRKTQPED ASSRLLLPRN QQNMTNGSLD IVNLFAMLAH LQGNNQVKPT  240
SIHPLPDRDC LVQLISKLSA SNNANPSARS SVPEGFDLNV SQVPAQASFG QSPKANGDEN  300
SPSKMNLLAV LSAALAASTP DAATSLSQGS KLGSATKYLS SESSNPMEER SPSSSPPVTK  360
KLFPLHSTMD MVKYSQASEC QEDKATVDLS SSHGGIAPLV LFKESETRVV NGTIQNLPYR  420
VGYKSSGSDH SPSSSNSDTQ DRTGRIIFKL FGKDPGSFPE TLRAQVLNWL SNSPSEMESY  480
IRPGCVVLSI YLSMPSIAWN ALEDNLLQRV TSLVQDSETE FWRSGRFLIR TNRQLVSHKD  540
GKIRLSKTWR AWSAPELMCV SPVAVVGGQE TSLALKGRNL TVPGTKIHCT YMGKYMSKEV  600
LCSAYPGTIY DDSCVERFDF LGGSPNVYGR FFIEVENGFK GNSFPVIIAD DSICQELRAL  660
ESDFEEDVQT PDAIPEEEVH NSVRPRSRED ALHFLNELGW LFQRTQASCS PLFADFSSTR  720
LKYLLTFSVE RDWCALIKTL LDILVERSLR NDTIKQESLK MLSEVELLNR AVKRKCRKMV  780
DLLLHYCVSH GQDVTKVYLF TPNMSGPGGI TPLHMAASMQ DSEDMVDALT NDPQEIGLKC  840
WNSLLDDNDQ SPFMYAMLRN NLSYNRLVER KLADRANDQV TILVEGGEIS IDGSWVGGSN  900
RHGAQNSQLR SCAQCALVGT ARLRRNARSK GLLQRPYVHS LLAIAAVCVC VCVFFRGAPQ  960
IGSIEPFKWE NLDFGPR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	7e-30	111	195	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009401512.1	0.0	PREDICTED: squamosa promoter-binding-like protein 15
Refseq	XP_009401513.1	0.0	PREDICTED: squamosa promoter-binding-like protein 15
Refseq	XP_018681977.1	0.0	PREDICTED: squamosa promoter-binding-like protein 15
Swissprot	A2YX04	0.0	SPL15_ORYSI; Squamosa promoter-binding-like protein 15
Swissprot	Q6Z8M8	0.0	SPL15_ORYSJ; Squamosa promoter-binding-like protein 15
TrEMBL	M0T0Q0	0.0	M0T0Q0_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P22250_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5456	38	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	squamosa promoter binding protein-like 14