PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr5P17850_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | bZIP | ||||||||
Protein Properties | Length: 242aa MW: 27306.6 Da PI: 10.5936 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 47.5 | 3.9e-15 | 174 | 223 | 6 | 55 |
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 6 rerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 rr++kNRe+A rsR+RK+a++ eLe +v L++eN +Lkk+ eel+ GSMUA_Achr5P17850_001 174 YRRRMIKNRESAARSRARKQAYTNELELEVSRLKEENAKLKKQYEELRSA 223 579**************************************999999864 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.9E-15 | 169 | 233 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.909 | 171 | 221 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 7.0E-16 | 172 | 223 | No hit | No description |
SuperFamily | SSF57959 | 1.75E-11 | 173 | 224 | No hit | No description |
CDD | cd14707 | 7.55E-24 | 173 | 223 | No hit | No description |
Pfam | PF00170 | 4.7E-13 | 174 | 223 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 176 | 191 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MRLLEHDNHH KKNSRADHKS SSSNIVSSSS SSKSSPSSNP SVLIPPTIRR RTVEEVWNDI 60 SLTTLHHERL LIPLDHQSYH HHHPASSPSF KGMILQDFLA GPLNRPRTIS PHAFEYLRPH 120 ADSHSNSSSN GQNACFIPFA ISGAIDGPPS PTALFSFCSK NRLPENSVVG TDRYRRRMIK 180 NRESAARSRA RKQAYTNELE LEVSRLKEEN AKLKKQYEEL RSAMVAQQHK SNTLQRSSTA 240 PF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:16099979, ECO:0000269|PubMed:16099980}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018681539.1 | 1e-154 | PREDICTED: protein FD-like | ||||
Swissprot | Q84JK2 | 3e-32 | FD_ARATH; Protein FD | ||||
TrEMBL | M0SZG4 | 1e-176 | M0SZG4_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr5P17850_001 | 1e-177 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9764 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35900.1 | 2e-31 | bZIP family protein |