PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr5P17480_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NF-YB

Protein Properties

Length: 161aa MW: 17665.4 Da PI: 5.3176

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr5P17480_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	174.9	8.1e-55	30	125	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkk 89 +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easd+c++ekrkt+ngdd++wal+tlGf+dy+ep++ yl+k GSMUA_Achr5P17480_001 30 KEQDRLLPIANVGRIMKQMLPPNAKISKEAKETMQECVSEFISFVTAEASDRCHKEKRKTVNGDDICWALGTLGFDDYAEPMRRYLHK 117 89************************************************************************************ PP NF-YB 90 yrelegek 97 yre+eg++ GSMUA_Achr5P17480_001 118 YREVEGDR 125 ****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.8E-52	27	136	IPR009072	Histone-fold
SuperFamily	SSF47113	2.79E-40	32	142	IPR009072	Histone-fold
Pfam	PF00808	5.3E-28	35	99	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	6.1E-19	63	81	No hit	No description
PRINTS	PR00615	6.1E-19	82	100	No hit	No description
PRINTS	PR00615	6.1E-19	101	119	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MADSSGNSQE AQGQALGTST GAGSGDGGIK EQDRLLPIAN VGRIMKQMLP PNAKISKEAK 60 ETMQECVSEF ISFVTAEASD RCHKEKRKTV NGDDICWALG TLGFDDYAEP MRRYLHKYRE 120 VEGDRSASNG QNTRSSNFGT GDGQTLFDDM DRNNPSTSRR Y

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	5e-45	29	120	1	92	Transcription factor HapC (Eurofung)
4g92_B	5e-45	29	120	1	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009401183.1	1e-119	PREDICTED: nuclear transcription factor Y subunit B-1-like
Swissprot	O82248	1e-57	NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBL	M0SZC7	1e-117	M0SZC7_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P17480_001	1e-118	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2917	38	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	1e-59	nuclear factor Y, subunit B5

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]