PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr5P03330_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 619aa MW: 68717.8 Da PI: 9.527 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 62.5 | 1.9e-19 | 1 | 103 | 1 | 94 |
GAGA_bind 1 mdddgsre..rnkg.yye........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalver 77 md+ g+r r k+ +y+ p+++lken++++l ++aerd++++er+la+sekkaa+ erdma+lqrd+a+aern+a+ver GSMUA_Achr5P03330_001 1 MDEGGQRGngRYKTdQYKpshaqwmaPQHHLKENQTIKL--IMAERDKALQERDLAISEKKAALVERDMAYLQRDAAIAERNNAIVER 86 788888655777777888888888776679998887777..589******************************************** PP GAGA_bind 78 dnkllalllvenslasa 94 dn++++l++++++ +sa GSMUA_Achr5P03330_001 87 DNAIASLEYARENGMSA 103 *******9987765533 PP | |||||||
2 | GAGA_bind | 267.5 | 7e-82 | 109 | 284 | 126 | 301 |
GAGA_bind 126 lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvC 213 +++ + e +pi+ a e+ ++ k k++ + +k +++ kk++k++++ + +++++ +++e+ks+dl+ln+v++D++t+PvPvC GSMUA_Achr5P03330_001 109 QKKDAQGEMFPISAASETGVKALKAKRGGKVTKVQSSSLKKPRKSKRVGIGEDLTKQVSMAKHHEWKSQDLGLNQVAYDDTTMPVPVC 196 5666777889999999998888888888888777777778888877777777777777788999************************ PP GAGA_bind 214 sCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 sCtG+ rqCYkWGnGGWqSaCCt+t+S+yPLPv++++r+aR++grKmS++af+klL++La+eG+dls pvDL++hWAkHGtn+++ti+ GSMUA_Achr5P03330_001 197 SCTGKYRQCYKWGNGGWQSACCTMTLSMYPLPVMPNKRHARVGGRKMSGSAFRKLLSRLASEGHDLSLPVDLREHWAKHGTNRYITIK 284 ***************************************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06217 | 6.7E-96 | 1 | 284 | IPR010409 | GAGA-binding transcriptional activator |
SMART | SM01226 | 1.8E-133 | 1 | 284 | IPR010409 | GAGA-binding transcriptional activator |
SMART | SM01130 | 3.4E-67 | 319 | 595 | IPR002220 | DapA-like |
Pfam | PF00701 | 3.1E-91 | 320 | 592 | IPR002220 | DapA-like |
CDD | cd00950 | 1.06E-112 | 321 | 591 | No hit | No description |
TIGRFAMs | TIGR00674 | 3.2E-63 | 322 | 588 | IPR005263 | 4-hydroxy-tetrahydrodipicolinate synthase, DapA |
Gene3D | G3DSA:3.20.20.70 | 4.5E-67 | 322 | 595 | IPR013785 | Aldolase-type TIM barrel |
SuperFamily | SSF51569 | 2.41E-62 | 322 | 595 | No hit | No description |
PRINTS | PR00146 | 5.2E-36 | 352 | 373 | IPR002220 | DapA-like |
PROSITE pattern | PS00665 | 0 | 355 | 372 | IPR020624 | Schiff base-forming aldolase, conserved site |
PRINTS | PR00146 | 5.2E-36 | 388 | 406 | IPR002220 | DapA-like |
PRINTS | PR00146 | 5.2E-36 | 420 | 436 | IPR002220 | DapA-like |
PRINTS | PR00146 | 5.2E-36 | 443 | 460 | IPR002220 | DapA-like |
PROSITE pattern | PS00666 | 0 | 448 | 478 | IPR020625 | Schiff base-forming aldolase, active site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009089 | Biological Process | lysine biosynthetic process via diaminopimelate | ||||
GO:0008840 | Molecular Function | 4-hydroxy-tetrahydrodipicolinate synthase |
Sequence ? help Back to Top |
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Protein Sequence Length: 619 aa Download sequence Send to blast |
MDEGGQRGNG RYKTDQYKPS HAQWMAPQHH LKENQTIKLI MAERDKALQE RDLAISEKKA 60 ALVERDMAYL QRDAAIAERN NAIVERDNAI ASLEYARENG MSASYASGQK KDAQGEMFPI 120 SAASETGVKA LKAKRGGKVT KVQSSSLKKP RKSKRVGIGE DLTKQVSMAK HHEWKSQDLG 180 LNQVAYDDTT MPVPVCSCTG KYRQCYKWGN GGWQSACCTM TLSMYPLPVM PNKRHARVGG 240 RKMSGSAFRK LLSRLASEGH DLSLPVDLRE HWAKHGTNRY ITIKVRRWRS PISAMIPNIH 300 LPMRSLEVKN RTSVDDIKSL RLITAVKTPY LPDGRFDLEA YDSLIHMQII NGAEGVIVGG 360 TTGEGHLMSW DEHIMLIGHT VNCFGTSIRV IGNTGSNSTG EAIHATEQGF AVGMHAALHI 420 NPYYGKTSLE GMVSHFEAVL SMGPTIIYNV PSRTGQDIPP SVIHTISQNP NMAGVKECMG 480 NDRIKGYVDK GIVIWSGNDD ECHDSRWAFG ATGVISVASN LVPGLMHELM FQGKNPSLNS 540 KLMPLIKWLF QEPNPIGLNT ALAQLGVIRP VFRLPYVPLP RARRLEFVRI VESLGRENFI 600 GEKAVEFLDD DDFILVGRY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3tuu_A | 0.0 | 294 | 619 | 21 | 346 | dihydrodipicolinate synthase |
3tuu_B | 0.0 | 294 | 619 | 21 | 346 | dihydrodipicolinate synthase |
3tuu_C | 0.0 | 294 | 619 | 21 | 346 | dihydrodipicolinate synthase |
3tuu_D | 0.0 | 294 | 619 | 21 | 346 | dihydrodipicolinate synthase |
3tuu_E | 0.0 | 294 | 619 | 21 | 346 | dihydrodipicolinate synthase |
3tuu_F | 0.0 | 294 | 619 | 21 | 346 | dihydrodipicolinate synthase |
3tuu_G | 0.0 | 294 | 619 | 21 | 346 | dihydrodipicolinate synthase |
3tuu_H | 0.0 | 294 | 619 | 21 | 346 | dihydrodipicolinate synthase |
4hnn_A | 0.0 | 294 | 619 | 21 | 346 | Dihydrodipicolinate synthase |
4hnn_B | 0.0 | 294 | 619 | 21 | 346 | Dihydrodipicolinate synthase |
4hnn_C | 0.0 | 294 | 619 | 21 | 346 | Dihydrodipicolinate synthase |
4hnn_D | 0.0 | 294 | 619 | 21 | 346 | Dihydrodipicolinate synthase |
4hnn_E | 0.0 | 294 | 619 | 21 | 346 | Dihydrodipicolinate synthase |
4hnn_F | 0.0 | 294 | 619 | 21 | 346 | Dihydrodipicolinate synthase |
4hnn_G | 0.0 | 294 | 619 | 21 | 346 | Dihydrodipicolinate synthase |
4hnn_H | 0.0 | 294 | 619 | 21 | 346 | Dihydrodipicolinate synthase |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009399385.1 | 0.0 | PREDICTED: 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic isoform X2 | ||||
Swissprot | Q42948 | 0.0 | DAPA_TOBAC; 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic | ||||
TrEMBL | M0SVB2 | 0.0 | M0SVB2_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr5P03330_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6226 | 37 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G21240.2 | 6e-94 | basic pentacysteine 4 |
Publications ? help Back to Top | |||
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