PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P03330_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family BBR-BPC
Protein Properties Length: 619aa    MW: 68717.8 Da    PI: 9.527
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P03330_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind62.51.9e-191103194
              GAGA_bind   1 mdddgsre..rnkg.yye........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalver 77 
                            md+ g+r   r k+ +y+        p+++lken++++l  ++aerd++++er+la+sekkaa+ erdma+lqrd+a+aern+a+ver
  GSMUA_Achr5P03330_001   1 MDEGGQRGngRYKTdQYKpshaqwmaPQHHLKENQTIKL--IMAERDKALQERDLAISEKKAALVERDMAYLQRDAAIAERNNAIVER 86 
                            788888655777777888888888776679998887777..589******************************************** PP

              GAGA_bind  78 dnkllalllvenslasa 94 
                            dn++++l++++++ +sa
  GSMUA_Achr5P03330_001  87 DNAIASLEYARENGMSA 103
                            *******9987765533 PP
2GAGA_bind267.57e-82109284126301
              GAGA_bind 126 lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvC 213
                            +++  + e +pi+ a e+  ++ k k++ + +k +++  kk++k++++   +  +++++  +++e+ks+dl+ln+v++D++t+PvPvC
  GSMUA_Achr5P03330_001 109 QKKDAQGEMFPISAASETGVKALKAKRGGKVTKVQSSSLKKPRKSKRVGIGEDLTKQVSMAKHHEWKSQDLGLNQVAYDDTTMPVPVC 196
                            5666777889999999998888888888888777777778888877777777777777788999************************ PP

              GAGA_bind 214 sCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                            sCtG+ rqCYkWGnGGWqSaCCt+t+S+yPLPv++++r+aR++grKmS++af+klL++La+eG+dls pvDL++hWAkHGtn+++ti+
  GSMUA_Achr5P03330_001 197 SCTGKYRQCYKWGNGGWQSACCTMTLSMYPLPVMPNKRHARVGGRKMSGSAFRKLLSRLASEGHDLSLPVDLREHWAKHGTNRYITIK 284
                            ***************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062176.7E-961284IPR010409GAGA-binding transcriptional activator
SMARTSM012261.8E-1331284IPR010409GAGA-binding transcriptional activator
SMARTSM011303.4E-67319595IPR002220DapA-like
PfamPF007013.1E-91320592IPR002220DapA-like
CDDcd009501.06E-112321591No hitNo description
TIGRFAMsTIGR006743.2E-63322588IPR0052634-hydroxy-tetrahydrodipicolinate synthase, DapA
Gene3DG3DSA:3.20.20.704.5E-67322595IPR013785Aldolase-type TIM barrel
SuperFamilySSF515692.41E-62322595No hitNo description
PRINTSPR001465.2E-36352373IPR002220DapA-like
PROSITE patternPS006650355372IPR020624Schiff base-forming aldolase, conserved site
PRINTSPR001465.2E-36388406IPR002220DapA-like
PRINTSPR001465.2E-36420436IPR002220DapA-like
PRINTSPR001465.2E-36443460IPR002220DapA-like
PROSITE patternPS006660448478IPR020625Schiff base-forming aldolase, active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009089Biological Processlysine biosynthetic process via diaminopimelate
GO:0008840Molecular Function4-hydroxy-tetrahydrodipicolinate synthase
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MDEGGQRGNG RYKTDQYKPS HAQWMAPQHH LKENQTIKLI MAERDKALQE RDLAISEKKA  60
ALVERDMAYL QRDAAIAERN NAIVERDNAI ASLEYARENG MSASYASGQK KDAQGEMFPI  120
SAASETGVKA LKAKRGGKVT KVQSSSLKKP RKSKRVGIGE DLTKQVSMAK HHEWKSQDLG  180
LNQVAYDDTT MPVPVCSCTG KYRQCYKWGN GGWQSACCTM TLSMYPLPVM PNKRHARVGG  240
RKMSGSAFRK LLSRLASEGH DLSLPVDLRE HWAKHGTNRY ITIKVRRWRS PISAMIPNIH  300
LPMRSLEVKN RTSVDDIKSL RLITAVKTPY LPDGRFDLEA YDSLIHMQII NGAEGVIVGG  360
TTGEGHLMSW DEHIMLIGHT VNCFGTSIRV IGNTGSNSTG EAIHATEQGF AVGMHAALHI  420
NPYYGKTSLE GMVSHFEAVL SMGPTIIYNV PSRTGQDIPP SVIHTISQNP NMAGVKECMG  480
NDRIKGYVDK GIVIWSGNDD ECHDSRWAFG ATGVISVASN LVPGLMHELM FQGKNPSLNS  540
KLMPLIKWLF QEPNPIGLNT ALAQLGVIRP VFRLPYVPLP RARRLEFVRI VESLGRENFI  600
GEKAVEFLDD DDFILVGRY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3tuu_A0.029461921346dihydrodipicolinate synthase
3tuu_B0.029461921346dihydrodipicolinate synthase
3tuu_C0.029461921346dihydrodipicolinate synthase
3tuu_D0.029461921346dihydrodipicolinate synthase
3tuu_E0.029461921346dihydrodipicolinate synthase
3tuu_F0.029461921346dihydrodipicolinate synthase
3tuu_G0.029461921346dihydrodipicolinate synthase
3tuu_H0.029461921346dihydrodipicolinate synthase
4hnn_A0.029461921346Dihydrodipicolinate synthase
4hnn_B0.029461921346Dihydrodipicolinate synthase
4hnn_C0.029461921346Dihydrodipicolinate synthase
4hnn_D0.029461921346Dihydrodipicolinate synthase
4hnn_E0.029461921346Dihydrodipicolinate synthase
4hnn_F0.029461921346Dihydrodipicolinate synthase
4hnn_G0.029461921346Dihydrodipicolinate synthase
4hnn_H0.029461921346Dihydrodipicolinate synthase
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCatalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009399385.10.0PREDICTED: 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic isoform X2
SwissprotQ429480.0DAPA_TOBAC; 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic
TrEMBLM0SVB20.0M0SVB2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P03330_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62263756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.26e-94basic pentacysteine 4
Publications ? help Back to Top
  1. Ghislain M,Frankard V,Jacobs M
    A dinucleotide mutation in dihydrodipicolinate synthase of Nicotiana sylvestris leads to lysine overproduction.
    Plant J., 1995. 8(5): p. 733-43
    [PMID:8528284]