PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P33360_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 239aa    MW: 26965.4 Da    PI: 7.9753
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P33360_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.12.8e-074264426
                           ---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                           + C+ f+r+G C+ Gd C  aHg
  GSMUA_Achr4P33360_001 42 AVCPEFRRSGSCPKGDACELAHG 64
                           78****************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.53E-53664IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-43865IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.0613966IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-54264IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-54266IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MYEFKVRRCM RGRSHDWTDC PFAHPGEKAR RRDPRRYHYS GAVCPEFRRS GSCPKGDACE  60
LAHGVFECWL HPARYRTMPC KDGRRCRRKI CFFAHFPRQL RILPSHKDDE TNYSQSCYGF  120
CSANDNSAAA SGFSPTSTLM SFSPPISPSA GEMHYDSKQM NFGLINRYIG NNTGRVIDYD  180
VVCEELMNSL DAMELSASPA TSPAAAAPTD ARGEWAVKSG NSSSSMCWPD LEWVNELLM
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269|PubMed:18487351}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009397189.11e-180PREDICTED: zinc finger CCCH domain-containing protein 2-like
SwissprotQ9ZWA12e-63C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBLM0SU981e-179M0SU98_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P33360_0011e-180(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.13e-64C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chang G, et al.
    AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana.
    Biochem. Biophys. Res. Commun., 2018. 501(1): p. 232-238
    [PMID:29723526]