PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P28390_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NF-YA
Protein Properties Length: 322aa    MW: 35275.9 Da    PI: 9.5955
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P28390_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA93.91.9e-29171227158
              CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                            d p+YVNaKQ+ +Il+RR++Rak+e+++kl ++ rkpylheSRh hA+rR Rg gGrF
  GSMUA_Achr4P28390_001 171 DGPIYVNAKQFYAILRRRKARAKAEKQNKL-IRVRKPYLHESRHLHAMRRVRGRGGRF 227
                            57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.4E-34169230IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115233.679170230IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.8E-26173227IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.5E-23173195IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860175195IPR018362CCAAT-binding factor, conserved site
PRINTSPR006167.5E-23204227IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MQSSTIFKNH GVGQLLVSQT PQAPLVPYWV GTQPLHGEPL GQLKSVTGDH INAEQQLPVV  60
SRRVNHFVVA GHGPGLGFEI PEKGGNSTAN CSNFPDHKDL GKEQKTQQYF APFSLQSSLP  120
ENPGHFKQGL GHSVVCPSHS YVDQFYGLYA TYGAAQAMHG RVLLPMDATT DGPIYVNAKQ  180
FYAILRRRKA RAKAEKQNKL IRVRKPYLHE SRHLHAMRRV RGRGGRFLNT EKVKDAMPPP  240
AMSPSSEILQ HDNVNLKSAS GGSEVTSLYE QENIDHFSII ERLHASVLHP LSNMVNGGGQ  300
GSGVIHNNWG AAADGCCDLL KV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A6e-17171232264HAPB protein
4g92_A6e-17171232264HAPB protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009397710.10.0PREDICTED: nuclear transcription factor Y subunit A-10
RefseqXP_009397712.10.0PREDICTED: nuclear transcription factor Y subunit A-10
RefseqXP_018679801.10.0PREDICTED: nuclear transcription factor Y subunit A-10
TrEMBLM0SSV10.0M0SSV1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P28390_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23073790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.21e-29nuclear factor Y, subunit A10