PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr4P27850_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NF-YB

Protein Properties

Length: 193aa MW: 20380.6 Da PI: 6.7949

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr4P27850_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	184.2	1e-57	28	123	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkk 89 reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yveplkvyl++ GSMUA_Achr4P27850_001 28 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQR 115 89************************************************************************************ PP NF-YB 90 yrelegek 97 +re+egek GSMUA_Achr4P27850_001 116 FRETEGEK 123 ****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.4E-54	25	127	IPR009072	Histone-fold
SuperFamily	SSF47113	6.99E-40	30	128	IPR009072	Histone-fold
Pfam	PF00808	5.4E-28	33	97	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	7.6E-21	61	79	No hit	No description
PROSITE pattern	PS00685	0	64	80	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	7.6E-21	80	98	No hit	No description
PRINTS	PR00615	7.6E-21	99	117	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MADSDNESGG HNNSGAGLGA AGELSSLREQ DRFLPIANVS RIMKKALPAN AKISKDAKET 60 VQECVSEFIS FITGEASDKC QREKRKTING DDLLWAMTTL GFEEYVEPLK VYLQRFRETE 120 GEKGAGSSSG GAAMYGGGMT MMMGQQVYGS PPSSSPYHHH HQLAMAAKHT TGSGDGGGGS 180 STSSTGIGRQ GRI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	9e-49	26	118	1	93	NF-YB
4awl_B	8e-49	26	118	2	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	8e-49	26	118	2	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
5g49_A	1e-48	26	118	5	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT009265	1e-124	BT009265.1 Triticum aestivum clone wlk8.pk0001.e10:fis, full insert mRNA sequence.
GenBank	HE996559	1e-124	HE996559.1 Triticum aestivum cv. Arina SNP, chromosome 3B, clone Taes_arina_ctg_58707.
GenBank	HM777005	1e-124	HM777005.1 Triticum aestivum cultivar Babax NF-YB3 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009397767.1	1e-108	PREDICTED: nuclear transcription factor Y subunit B-3-like
Swissprot	O23310	2e-74	NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBL	M0SSP7	1e-140	M0SSP7_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr4P27850_001	1e-141	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP201	38	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	8e-67	nuclear factor Y, subunit B3

Publications ? help Back to Top
Han X, et al. Overexpression of the poplar NF-YB7 transcription factor confers drought tolerance and improves water-use efficiency in Arabidopsis. J. Exp. Bot., 2013. 64(14): p. 4589-601 [PMID:24006421] Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Hossain MA, et al. Identification of Novel Components of the Unfolded Protein Response in Arabidopsis. Front Plant Sci, 2016. 7: p. 650 [PMID:27242851] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]