PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P23210_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family G2-like
Protein Properties Length: 372aa    MW: 41786.2 Da    PI: 9.1388
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P23210_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.97e-31255310156
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                            k+r++W++eLH+rF++a++qLGG ++AtPk+i++ mkv+gLt+++vkSHLQkYRl+
  GSMUA_Achr4P23210_001 255 KARRCWSQELHRRFMRAIQQLGGVQVATPKQIRDRMKVDGLTNDEVKSHLQKYRLH 310
                            68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.367252312IPR017930Myb domain
SuperFamilySSF466899.86E-17253313IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-27254314IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-25255310IPR006447Myb domain, plants
PfamPF002499.8E-7257308IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MAVAEEMGLE MKLCAMRTVG GFLKEASAIE CGDGGRAARL EESIRSLEEE KRKIEAFKRE  60
LPLCMHLLGE VIEGLNKEIE RFRCERFGRA FEEFVPVKSK VEEGGGIKEE TEYKDKRNWM  120
SSAKLWNDNC SQNNNDSKKH DKIKFKEVER RIFTKDGDSH RRQGKENFFS ERKSRNGGGA  180
FVPFRGLPPF ADSCKREEEK PAAALPDLSL QSPAIRNHHV SGCASRAVGN APEMTPATVG  240
AHVSLQSLQQ QPPRKARRCW SQELHRRFMR AIQQLGGVQV ATPKQIRDRM KVDGLTNDEV  300
KSHLQKYRLH TRRMSNASAI PQDQHTCSSQ QSVSQSNSPQ SPLQLAGSAL ALSVTAGESL  360
EDDGKSESYS WK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2260430.0AC226043.1 Musa acuminata clone BAC MA4-57L19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009398291.10.0PREDICTED: myb family transcription factor EFM isoform X2
TrEMBLM0SRD20.0M0SRD2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P23210_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP181737107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.12e-47G2-like family protein