PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P23070_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 313aa    MW: 33917.9 Da    PI: 10.0813
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P23070_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.23.5e-14134181355
                            HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            + h ++Er+RR+++N++f  L  ++P +     kK +Ka+iL  Av+Y+k+Lq
  GSMUA_Achr4P23070_001 134 QEHIIAERNRREKLNQKFIALSAIIPGL-----KKADKASILGDAVRYLKELQ 181
                            6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.948131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-11134181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-17135193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.19E-16135198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.01E-13136185No hitNo description
SMARTSM003532.1E-14137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MDESNLLRQW EIASPNQDIP QAAPAPGRGL IPQSLSSESH TSPPFRPVSS SPGFVAGSSM  60
SQEIISWDFS PGAGKMDPGG SSLPSLLLPK PSPQSDSVPG RAVKMKEGIR VCAPGGSKQR  120
HGTLLQRATL SQAQEHIIAE RNRREKLNQK FIALSAIIPG LKKADKASIL GDAVRYLKEL  180
QGRVKALEDQ NMERTVESVV LVTKAQLSAD DDGGSSSDEN FDGQPWQKPF PEIEAKVSGK  240
MVLVRIHCEN RKGVLVKILS EIEHLNLTIT NTNVMPFLGS SINITVTAQA RPIFPKFSMT  300
AKDLVRKLKS ALT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-13136193966Transcription factor MYC2
5gnj_B5e-13136193966Transcription factor MYC2
5gnj_E5e-13136193966Transcription factor MYC2
5gnj_F5e-13136193966Transcription factor MYC2
5gnj_G5e-13136193966Transcription factor MYC2
5gnj_I5e-13136193966Transcription factor MYC2
5gnj_M5e-13136193966Transcription factor MYC2
5gnj_N5e-13136193966Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2260430.0AC226043.1 Musa acuminata clone BAC MA4-57L19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009398315.10.0PREDICTED: transcription factor bHLH18-like
RefseqXP_018680476.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLM0SRB80.0M0SRB8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P23070_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.18e-49bHLH family protein