PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P19530_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 327aa    MW: 35949.7 Da    PI: 4.8349
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P19530_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.81.6e-174695255
                           HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                           r +h+++E+rRR +iN++f+ Lr+l+P++    ++K + a+ L +++eYIk Lq
  GSMUA_Achr4P19530_001 46 RSKHSAMEQRRRCKINDRFQILRDLIPHS----DQKRDRASFLMEVIEYIKFLQ 95
                           899*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.98E-1844104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-2144117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.5264494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.95E-164699No hitNo description
PfamPF000104.7E-154695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.2E-1350100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MESACRSSGD EEELGRGRRS CSPGVELSAK VDGKSGEKAA MPTSPRSKHS AMEQRRRCKI  60
NDRFQILRDL IPHSDQKRDR ASFLMEVIEY IKFLQEKEQK HELYSGWNQE NAKLVPWSNT  120
DGICDPKNGP AQPGFLFSEK FIDNNIPVVP LNATNAAETD TNAGTDTVLD PLQSNAYASL  180
ERGPGLSHPQ ERLVSDPDNF LSQPQSGWQR SSCPADCTMS SDMLSEQEEL VIDEGTINIS  240
TVYSQGFLTT ITQALQSSGV DLSQASISVQ INLGRRANRR SVATTTMSSA KDNCNHSPLD  300
QVMGDSVVGS NGDESEQAPK RQKIDDH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009398747.10.0PREDICTED: transcription factor BIM2-like isoform X2
TrEMBLM0SQB60.0M0SQB6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P19530_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.15e-55BES1-interacting Myc-like protein 2