PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P18450_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family HB-other
Protein Properties Length: 350aa    MW: 39186.3 Da    PI: 6.5142
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P18450_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox246.7e-081375656
                           S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
               Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
                           +ft++++ e+e++ ++  n  p +e +  LA+k            ++ +qV +WFqNrR+ ++
  GSMUA_Achr4P18450_001 13 RFTQNEVLEMEACLQEvnNAIPPREIICALADKFsatpervgkiVVQPKQVWNWFQNRRYAQR 75
                           69*************766999*********************9999*************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.27E-10576IPR009057Homeodomain-like
SMARTSM003890.0021781IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.1E-61378IPR009057Homeodomain-like
PfamPF000462.3E-51375IPR001356Homeobox domain
PROSITE profilePS500719.2161377IPR001356Homeobox domain
CDDcd000861.46E-41375No hitNo description
PfamPF167192.4E-42119245IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MGRPPHGGGP VFRFTQNEVL EMEACLQEVN NAIPPREIIC ALADKFSATP ERVGKIVVQP  60
KQVWNWFQNR RYAQRAKLGK APNKLTILPM ARDESPPFTN VAAPISAPSG RNSTDNALVE  120
FEAKSARDGA WYDVSAFLSH RMFDTGDPEV RVRFSGFGVE EDEWINVRRC VRQRSLPCEA  180
AECVAVLPGD LILCFQEGKE QALYFDAHVL DVQRRRHDIR GCRCRFLVRY DHDQSEEIVP  240
LRKVCRRPET DYRLQMLQAS KVSGGPVDLQ AAARDLTPSS SKDFGLQRTR KQRKLMDVNT  300
DEVTMVALSH PNDPASLQGD NPAAAIENSS STPSNVMMED AAVNMESIDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A2e-481162491134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B2e-481162491134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A2e-481162491134SHH1 SAWADEE
4iur_B2e-481162491134SHH1 SAWADEE
4iut_A2e-481162491134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B2e-481162491134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A2e-481162491134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B2e-481162491134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A2e-481162491134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B2e-481162491134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009397059.10.0PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2
SwissprotQ8RWJ71e-129SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLM0SQ080.0M0SQ08_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P18450_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41902948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-119sequence-specific DNA binding transcription factors;sequence-specific DNA binding