PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P17950_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family E2F/DP
Protein Properties Length: 404aa    MW: 45311.5 Da    PI: 5.6146
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P17950_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP841.2e-2690155171
                E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                            r+++sL+llt+kf++ll+k+++g ++ln++a++L   +v  ++RRiYDi+NVLe+++liek+ kn+irwkg
  GSMUA_Achr4P17950_001  90 RYDSSLGLLTKKFIDLLHKAKDGSLDLNTAAETL---EV--QKRRIYDITNVLEGVGLIEKTFKNKIRWKG 155
                            6899******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.7E-2886156IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.58E-1790153IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.4E-3390155IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023195.1E-2492155IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440749.15E-26184286No hitNo description
PfamPF164211.7E-27187284IPR032198E2F transcription factor, CC-MB domain
CDDcd146602.88E-35187287No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MHEAEKKDIQ SADGAINQAL KEEFNGSTIP TGLGIAIKRQ RKTKLKSKHL ELHTSGSTDG  60
NSGGHFIHLL YDIRYTCSTH LNPLASNSCR YDSSLGLLTK KFIDLLHKAK DGSLDLNTAA  120
ETLEVQKRRI YDITNVLEGV GLIEKTFKNK IRWKGIDMSR PKELDDQIAR LKVCHLGNAV  180
PYKSILAEVK ALYSEDCRLD EMIREIQESL WVFTEDENHK KGLYLTKEDI TSIPCLQDAV  240
LIAIKAPHGT SVEVPDPDEG IDFPQRRYQI FLRSSIGPIN CFLISNHMDR IGASNHSPQE  300
AATDSCIQSS SSNNGISLQP TEQDAGQGYE LEDPVPPRIL LDSIISNDCM GGIVKIVPSD  360
VDIEADYWLF SDLRSSITDA WRTECILELN RTRSCIFLFL MQIY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A1e-2389156674PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009396998.10.0PREDICTED: transcription factor E2FB-like isoform X1
RefseqXP_018680105.10.0PREDICTED: transcription factor E2FB-like isoform X2
TrEMBLM0SPV80.0M0SPV8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P17950_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.26e-88E2F transcription factor 1