PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P14460_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MIKC_MADS
Protein Properties Length: 240aa    MW: 27282.1 Da    PI: 8.595
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P14460_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.68.1e-29959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           krienk+nrqv+f+kRr g+lKKA+ELSvLCdaeva+i+fs +g+l+e++s
  GSMUA_Achr4P14460_001  9 KRIENKINRQVSFAKRRCGLLKKAHELSVLCDAEVALIVFSAHGRLFEFCS 59
                           79***********************************************96 PP
2K-box96.25e-328217210100
                  K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                            + ++a++++qe+ k+k++ie Lqr+q +llGe+L++Ls++eL++Le+q+e s+k+iRskK++l+l+q+ +l+ ke+elq++nk+Lr+k
  GSMUA_Achr4P14460_001  82 TLSEAQNSYQEYLKMKARIEYLQRSQSNLLGEELGPLSINELERLENQIEVSIKQIRSKKMQLMLDQLYDLKDKEQELQKDNKNLRRK 169
                            55788*********************************************************************************** PP

                  K-box  98 lee 100
                            l+e
  GSMUA_Achr4P14460_001 170 LQE 172
                            987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.693161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-31281IPR002100Transcription factor, MADS-box
CDDcd002651.81E-40271No hitNo description
PRINTSPR004048.8E-30323IPR002100Transcription factor, MADS-box
PfamPF003195.1E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-303859IPR002100Transcription factor, MADS-box
PfamPF014869.1E-2785171IPR002487Transcription factor, K-box
PROSITE profilePS5129716.02386176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVS FAKRRCGLLK KAHELSVLCD AEVALIVFSA HGRLFEFCST  60
SSMLKILERY QMFRNNAESI PTLSEAQNSY QEYLKMKARI EYLQRSQSNL LGEELGPLSI  120
NELERLENQI EVSIKQIRSK KMQLMLDQLY DLKDKEQELQ KDNKNLRRKL QEGGSQTQLQ  180
PSWPDGGNSA AKKPPRAEGL LQLLEYDPAL QVGSSQSCTA PSNDGEGAAR DDDGLIPRWL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A5e-24761737104Developmental protein SEPALLATA 3
4ox0_B5e-24761737104Developmental protein SEPALLATA 3
4ox0_C5e-24761737104Developmental protein SEPALLATA 3
4ox0_D5e-24761737104Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009396439.11e-176PREDICTED: truncated transcription factor CAULIFLOWER A-like
SwissprotQ8LLR29e-86MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLM0SNW11e-175M0SNW1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P14460_0011e-175(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22213264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.13e-77MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]