PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P13790_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family LBD
Protein Properties Length: 232aa    MW: 24769.1 Da    PI: 5.67
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P13790_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260101.38.6e-324107199
                 DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 
                            +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++
  GSMUA_Achr4P13790_001   4 SCNGCRVLRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSG 91 
                            6*************************************************************************************** PP

                 DUF260  84 qqqleqlkaelallke 99 
                            ++ql+q+++e++l ++
  GSMUA_Achr4P13790_001  92 SWQLCQAAVEAVLKGA 107
                            **********998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.0023109IPR004883Lateral organ boundaries, LOB
PfamPF031953.2E-254103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPDH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGAPIV QIPYEKAAST  120
PAPPLKAYDI RHVSKDSAAA AARAAEELHK NESMASADTA EEASHVSQGE PQRAEEAEQE  180
EGEISLELTL GLEPASRSAR PAEHEAAPRC DVSSWDAVAC TSGLGLALPP PS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009396373.11e-141PREDICTED: LOB domain-containing protein 41-like
SwissprotQ9M8866e-89LBD41_ARATH; LOB domain-containing protein 41
TrEMBLM0SNP41e-168M0SNP4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P13790_0011e-168(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.17e-85LOB domain-containing protein 41