PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_Achr4P08020_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 151aa MW: 16728.1 Da PI: 9.5682 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.1 | 8.1e-38 | 45 | 101 | 5 | 61 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 al+cprC+s++tkfCy+nny+++qPr+fC+aC+ryWt+GG+lrnvPvG+grrk +++ GSMUA_Achr4P08020_001 45 ALPCPRCQSKETKFCYFNNYNVNQPRHFCRACHRYWTAGGTLRNVPVGAGRRKMRRA 101 679**************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50884 | 28.276 | 46 | 100 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 7.7E-32 | 46 | 100 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 8.0E-24 | 46 | 99 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 48 | 84 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 151 aa Download sequence Send to blast |
MGEVDEATSI KLFGAVILKE DTQAKEKKEA KDETAAAREA ASAVALPCPR CQSKETKFCY 60 FNNYNVNQPR HFCRACHRYW TAGGTLRNVP VGAGRRKMRR APHAGTTPSA GGTTCVMAYP 120 SPSYLAERWL LRQRPEVQPT ADFATFNRGL C |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Transcriptional repressor of 'CONSTANS' expression (By similarity). Regulates a photoperiodic flowering response. {ECO:0000250, ECO:0000269|PubMed:19619493}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. The transcript level rises progressively from dawn and decreases during the night. {ECO:0000269|PubMed:19619493}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AJ969263 | 9e-48 | AJ969263.1 Hordeum vulgare dof17 gene for dof zinc finger protein 17, cultivated variety Bomi. | |||
GenBank | AK360617 | 9e-48 | AK360617.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1121P17. | |||
GenBank | AK365055 | 9e-48 | AK365055.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2030J14. | |||
GenBank | HG670306 | 9e-48 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009395706.1 | 1e-110 | PREDICTED: dof zinc finger protein DOF1.5-like | ||||
Swissprot | O22967 | 9e-33 | CDF4_ARATH; Cyclic dof factor 4 | ||||
TrEMBL | M0SM19 | 1e-109 | M0SM19_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P08020_001 | 1e-110 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6495 | 28 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G29160.1 | 5e-32 | Dof family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|