PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr4P03700_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | LBD | ||||||||
Protein Properties | Length: 326aa MW: 36020 Da PI: 7.674 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 95.7 | 5e-30 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +C++C+vlr++C++dC ++p++ p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg++l++ GSMUA_Achr4P03700_001 4 SCNGCRVLRKGCSDDCSIRPCLrwiksPESQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLLSG 91 6*************************************************************************************** PP DUF260 84 qqqleqlkaelallke 99 ++ql q+++e++l ++ GSMUA_Achr4P03700_001 92 SWQLTQAAVEAVLKGA 107 *********9998766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.53 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.3E-24 | 4 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSDDCS IRPCLRWIKS PESQANATVF LAKFYGRAGL MNLINAGPDH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLLS GSWQLTQAAV EAVLKGAPIV QIPSETAAST 120 PTPPLKASDI RHISKDPGAG GCARAAAELH KESMSSADIA EASSHVSQGE PDRAEAEEDD 180 EVGLELTLGS GPFSRSHRDE ARRVHDPDAC TTDLGLASCE EHIFVINQEK HLELKKREKD 240 DVLILKVTIQ NISSQKKFAL FFHPYRGIKR KWVYNDLELP SYQTRISWVD AAPELCQPQP 300 YPKTVTIFVI TCSRRRTGNR TVESFD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009394707.1 | 1e-121 | PREDICTED: LOB domain-containing protein 41-like | ||||
TrEMBL | M0SKT7 | 0.0 | M0SKT7_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P03700_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1235 | 37 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 4e-76 | LOB domain-containing protein 41 |