PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P01450_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family SBP
Protein Properties Length: 357aa    MW: 38204.7 Da    PI: 8.6268
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P01450_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP106.81.5e-3363150175
                            --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS.............EEETTT--SS--S-STTTT-------S CS
                    SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr.............fhelsefDeekrsCrrrLakhnerrrk 75 
                            +CqvegC++dl+ ak y+ rhkvC +hskap+v+v+gleqrfCqqCsr             fh+l efD++krsCrrrLa+hnerrrk
  GSMUA_Achr4P01450_001  63 RCQVEGCHVDLTGAKAYYCRHKVCGMHSKAPKVMVAGLEQRFCQQCSRtrvdfltdiavslFHQLPEFDQGKRSCRRRLAGHNERRRK 150
                            6*********************************************9988998888888889*************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.3E-3156138IPR004333Transcription factor, SBP-box
PROSITE profilePS5114127.8261151IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.62E-3362154IPR004333Transcription factor, SBP-box
PfamPF031102.7E-1864111IPR004333Transcription factor, SBP-box
PfamPF031103.3E-8122150IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MEMGANSLGV SGSSSGSSDS LHGLAFGKKI YFEDGGGGGG GGYGGSSSNA PGVVHGGKQQ  60
PPRCQVEGCH VDLTGAKAYY CRHKVCGMHS KAPKVMVAGL EQRFCQQCSR TRVDFLTDIA  120
VSLFHQLPEF DQGKRSCRRR LAGHNERRRK LPPGPFASRY GRNASSFHGP SRFRSFLMDF  180
NYPRFSSNTG DVWPTIRPAD RVVGNQISLG LLFPPSGAAM AHDGHPPLEE PLYSIPQIPP  240
GECHAGVTDL SCALSLLSTQ PPWSSNTTLR NQTSTSSASS SFDGTSTAQP AISNTCMTNQ  300
WSFIGNGGRR SNSQNVQRDM GLATVAAEDV HGQFSGELEL ARQGNGQCLG HVMHWSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-26641501184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009395001.10.0PREDICTED: squamosa promoter-binding-like protein 14
SwissprotQ7EXZ27e-76SPL14_ORYSJ; Squamosa promoter-binding-like protein 14
TrEMBLM0SK620.0M0SK62_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P01450_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25273787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.13e-44squamosa promoter binding protein-like 9
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Miura K, et al.
    OsSPL14 promotes panicle branching and higher grain productivity in rice.
    Nat. Genet., 2010. 42(6): p. 545-9
    [PMID:20495564]
  3. Jiao Y, et al.
    Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice.
    Nat. Genet., 2010. 42(6): p. 541-4
    [PMID:20495565]
  4. Springer N
    Shaping a better rice plant.
    Nat. Genet., 2010. 42(6): p. 475-6
    [PMID:20502488]
  5. Wang Y,Li J
    Branching in rice.
    Curr. Opin. Plant Biol., 2011. 14(1): p. 94-9
    [PMID:21144796]
  6. Wang J,Kong L,Gao G,Luo J
    A brief introduction to web-based genome browsers.
    Brief. Bioinformatics, 2013. 14(2): p. 131-43
    [PMID:22764121]
  7. Luo L,Li W,Miura K,Ashikari M,Kyozuka J
    Control of tiller growth of rice by OsSPL14 and Strigolactones, which work in two independent pathways.
    Plant Cell Physiol., 2012. 53(10): p. 1793-801
    [PMID:22960246]
  8. Liu Q, et al.
    The alteration in the architecture of a T-DNA insertion rice mutant osmtd1 is caused by up-regulation of MicroRNA156f.
    J Integr Plant Biol, 2015. 57(10): p. 819-29
    [PMID:25677853]
  9. Cruz-Garcia GS,Struik PC
    Spatial and Seasonal Diversity of Wild Food Plants in Home Gardens of Northeast Thailand1.
    Econ. Bot., 2015. 69(2): p. 99-113
    [PMID:26160981]
  10. Srikanth B, et al.
    Enhanced expression of OsSPL14 gene and its association with yield components in rice (Oryza sativa) under low nitrogen conditions.
    Gene, 2016. 576(1 Pt 3): p. 441-50
    [PMID:26519999]
  11. Perignon M, et al.
    Impact of Multi-Micronutrient Fortified Rice on Hemoglobin, Iron and Vitamin A Status of Cambodian Schoolchildren: a Double-Blind Cluster-Randomized Controlled Trial.
    Nutrients, 2016.
    [PMID:26751473]
  12. Kim SR, et al.
    Development and validation of allele-specific SNP/indel markers for eight yield-enhancing genes using whole-genome sequencing strategy to increase yield potential of rice, Oryza sativa L.
    Rice (N Y), 2016. 9(1): p. 12
    [PMID:26987543]