PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P17290_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 570aa    MW: 61101.5 Da    PI: 8.5543
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P17290_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.31.8e-10402449455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++Y++sLq
  GSMUA_Achr3P17290_001 402 SHSLAERVRREKISKRMKLLQDLVPGC----NKITGKAMMLDEIINYVQSLQ 449
                            8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-16396466IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.44E-11396453No hitNo description
PROSITE profilePS5088815.434398448IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-16398465IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.8E-8402449IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-10404454IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MAPPSLASKA PHSLTANCGD PILAFRPHLS LSLSIYTRRS TPPSFRPSSL SLSSSSPPSF  60
RKNTSFPHFS RSLPQFPPAG MEKERFLSVD CKSPDMNSGA VAEQLPRPFL DLGWEQPVHH  120
DAQFESAISS FVSSPSSNPS AGNGSVVVRA LIGRFGSICD SGEISQTSCY STPLDSPPKL  180
TLPVLGHLQQ GGGGLPMPGT MADGQFTPLA ANPGFTERAA RSSCFGAWSY GGLGDQSGLP  240
VARNLSRAPS SHSLKSAGAL QMGVPDNGKD ASKSNPERME MEMRSKLGGG MPPSSTSGRT  300
MAGGAANNVS KRKAASKGRR KEAPLSSSNV NSPTAAEDEH PDAKRCKSAK NNGADEDSVV  360
KQETEQNIGA SQKKGKENNA KPPEPPKDYI HVRARRGQAT DSHSLAERVR REKISKRMKL  420
LQDLVPGCNK ITGKAMMLDE IINYVQSLQR QVEFLSMKLA TINPQLDFDL ETLLQENMHQ  480
EHEPLPQQVY PLEGTSTAFS YAQRPQGSPL QSAITNGLGV GQQPQCPIDG LADATSQLGN  540
FWESDLQYVV QLGFGQSQGA EFFSRSLNAE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009392658.20.0PREDICTED: transcription factor bHLH77
TrEMBLM0SFE50.0M0SFE5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P17290_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.17e-54bHLH family protein