PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P15930_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MIKC_MADS
Protein Properties Length: 240aa    MW: 27284.3 Da    PI: 8.1251
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P15930_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.42.1e-29959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           krienk+nrqvtf+kRrng+lKKA+ELS+LCdaeva i+fss+g+l+e++s
  GSMUA_Achr3P15930_001  9 KRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVAAIVFSSRGRLFEFCS 59
                           79***********************************************96 PP
2K-box85.61e-28791736100
                  K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                             + + ++++ +++qe+ kLk  +  Lq++q++llGedL++L++keL qL +q+e sl+ iRs+K++++++q+  l++ e++l e nk+
  GSMUA_Achr3P15930_001  79 ESMVPTNDTPTCYQEYLKLKTHVGYLQHSQKNLLGEDLDTLNIKELDQLDDQIEMSLRLIRSTKTQVIIDQLTGLKREEQMLLESNKT 166
                            444778889999**************************************************************************** PP

                  K-box  94 Lrkklee 100
                            Lr+kl+e
  GSMUA_Achr3P15930_001 167 LRRKLQE 173
                            ****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.492161IPR002100Transcription factor, MADS-box
SMARTSM004328.0E-41160IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.89E-33277IPR002100Transcription factor, MADS-box
CDDcd002651.42E-43275No hitNo description
PRINTSPR004041.0E-31323IPR002100Transcription factor, MADS-box
PfamPF003192.4E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-313859IPR002100Transcription factor, MADS-box
PfamPF014861.6E-2586172IPR002487Transcription factor, K-box
PROSITE profilePS5129714.21487177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSILCD AEVAAIVFSS RGRLFEFCSS  60
SSMLKIIERY RRCSHHASES MVPTNDTPTC YQEYLKLKTH VGYLQHSQKN LLGEDLDTLN  120
IKELDQLDDQ IEMSLRLIRS TKTQVIIDQL TGLKREEQML LESNKTLRRK LQEVDAENSI  180
RLPSQIRASN CIDEPPQPEK FFEPLVCHPS LQIGLSQAST DPSGGGTMSL NVNGFDAAWI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A2e-19751711101Developmental protein SEPALLATA 3
4ox0_B2e-19751711101Developmental protein SEPALLATA 3
4ox0_C2e-19751711101Developmental protein SEPALLATA 3
4ox0_D2e-19751711101Developmental protein SEPALLATA 3
6bz1_A1e-191102195MEF2 CHIMERA
6bz1_B1e-191102195MEF2 CHIMERA
6bz1_C1e-191102195MEF2 CHIMERA
6bz1_D1e-191102195MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8153721e-123KC815372.1 Musa acuminata isolate LOF18 sepallata-like MADS box transcription factor LOFSEP (LOFSEP-1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018678923.11e-179PREDICTED: MADS-box protein CMB1-like
SwissprotQ8LLR23e-91MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLM0SF091e-178M0SF09_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P15930_0011e-179(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22213264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.11e-78MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]