PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P13400_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARR-B
Protein Properties Length: 628aa    MW: 69664.9 Da    PI: 6.9474
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P13400_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like78.39.6e-25201250151
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                            kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ Lt+e+v+SHLQ
  GSMUA_Achr3P13400_001 201 KPRVVWSIELHRKFVAAVNQL-GIDKAVPKKILDLMNVENLTRENVASHLQ 250
                            79*******************.***************************** PP
2Response_reg79.41.2e-26191271109
                            EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHH CS
           Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeeda 86 
                            vl vdD+p+ +++l+++l + +y +v++++ ++ al+ll+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+ge + +
  GSMUA_Achr3P13400_001  19 VLAVDDDPTCLKVLENLLVRCQY-NVTTTTRATTALKLLRENRdkYDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGERQAV 104
                            799********************.***************999889*******************87754.558*************** PP

                            HHHHHTTESEEEESS--HHHHHH CS
           Response_reg  87 lealkaGakdflsKpfdpeelvk 109
                             + +  Ga d+l Kp+ ++el++
  GSMUA_Achr3P13400_001 105 MKGITHGACDYLLKPVRMQELRN 127
                            ********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.5E-4216140No hitNo description
SuperFamilySSF521724.41E-3516137IPR011006CheY-like superfamily
SMARTSM004482.0E-3217129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.99318133IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.6E-2419128IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.81E-2420133No hitNo description
PROSITE profilePS5129412.929198257IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.0E-26198266IPR009057Homeodomain-like
SuperFamilySSF466895.73E-16199251IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-21201250IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MTAEERSAVK DEFPVGMRVL AVDDDPTCLK VLENLLVRCQ YNVTTTTRAT TALKLLRENR  60
DKYDLVISDV HMPDMDGFKL LELVGLEMDL PVIMLSANGE RQAVMKGITH GACDYLLKPV  120
RMQELRNIWQ HVIRRRKSAG VQNNNVNNEE DSQKDQVTDS ESSQWVKDHN ERPKKRHKDQ  180
NEENDSEENM QENETSSSQK KPRVVWSIEL HRKFVAAVNQ LGIDKAVPKK ILDLMNVENL  240
TRENVASHLQ ASVIPKIKYR LYLKRLSAVT GQHASVASAL RFRNLSCVNM ESLDVFRNYH  300
ALGRSRQLPS LTSLQPNGML DRVNGPSVPA GPNLLHGVPT SFHLCGSSIA NVASNFPLLQ  360
ANKQHLEHGG LGDYSSVTMP LSSADPFDDL QDLSQLPHIG IPNVTWQDAV LSTEHSANAL  420
PGCAPFIHES LSLCQSGGDN SLQSPLAGNK NHGKYFSNVA VTPLTATQHQ VNLFGGNMMI  480
MPAGSDDNPN IKSLGNYRQE WHHTFDPNAT LGSSLCPSLP HLGVNEKILQ HQTSESSIHN  540
KMMGAIETGQ AFGVPSLQYK CMLDKSTVEI QLNYKDDYGS ENNKSCSRVT SPGCSYGNIA  600
DVMTKPVCFL SMFLLYNLSA CSIIHSFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-22197267164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009392157.10.0PREDICTED: two-component response regulator ORR24-like
SwissprotQ6H8051e-145ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBLM0SEA70.0M0SEA7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P13400_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81473447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-102response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]