PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P13190_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

ERF

Protein Properties

Length: 133aa MW: 14528.2 Da PI: 10.2218

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P13190_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	55.2	1.8e-17	20	69	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a +l+g GSMUA_Achr3P13190_001 20 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTALFYLRG 69 59***99.******9...336***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	3.4E-35	20	83	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.247	20	77	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.4E-30	20	78	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.2E-11	21	32	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.09E-21	21	79	IPR016177	DNA-binding domain
CDD	cd00018	8.76E-27	21	79	No hit	No description
Pfam	PF00847	4.5E-11	21	69	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.2E-11	59	79	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 133 aa Download sequence Send to blast
MEMEGLLPSK KAATRGKERP YRGIRMRKWG KWVAEIREPN KRSRIWLGSY STPVAAARAY 60 DTALFYLRGR TARLNFPDDI SVDDGDAARG AAAAMSAALI RKKAAENPDL NQAPSPESSG 120 DDWSSSSGGD SSH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-15	21	85	15	80	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB023482	1e-43	AB023482.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone P0680A03.
GenBank	AK107775	1e-43	AK107775.1 Oryza sativa Japonica Group cDNA clone:002-133-B12, full insert sequence.
GenBank	AP002536	1e-43	AP002536.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0015I14.
GenBank	AP014962	1e-43	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBank	CP012614	1e-43	CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009392127.1	3e-85	PREDICTED: ethylene-responsive transcription factor RAP2-9-like
Swissprot	Q9FH94	5e-39	ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBL	M0SE86	2e-90	M0SE86_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P13190_001	4e-91	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3943	30	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67190.1	7e-38	DREB and EAR motif protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]