PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr3P07740_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 194aa MW: 21925.7 Da PI: 7.023 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.6 | 2.2e-18 | 53 | 107 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +k+ +++keq Lee F+++++++ +++ LAk+l+L+ rqV vWFqNrRa+ k GSMUA_Achr3P07740_001 53 KKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLQPRQVEVWFQNRRARTK 107 678899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 129.1 | 1.7e-41 | 53 | 143 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk+rlskeq+++LEesF+e+++L+p++K +la++L+lqprqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr GSMUA_Achr3P07740_001 53 KKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLQPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCQTLTEENRRLQKEVAELR 140 59*************************************************************************************9 PP HD-ZIP_I/II 89 eelk 92 +lk GSMUA_Achr3P07740_001 141 -ALK 143 .555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.24E-18 | 48 | 110 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.682 | 49 | 109 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.5E-15 | 51 | 113 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-17 | 53 | 107 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.40E-15 | 53 | 110 | No hit | No description |
Pfam | PF00046 | 8.1E-16 | 53 | 107 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 84 | 107 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 4.1E-11 | 109 | 143 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 9.5E-25 | 109 | 152 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MGLDVGRREE EEEEAASGDE EEGGKEDGEV RRGGVVERAS SIVSDEEENG LAKKKLRLSK 60 EQSAFLEESF KEHNTLNPKQ KLALAKQLNL QPRQVEVWFQ NRRARTKLKQ TEVDCEYLKR 120 CCQTLTEENR RLQKEVAELR ALKTTHPFHM HLPATTLSMC PSCERVASTA ADHRPSSFAA 180 LFSKPTPAAP RQPP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 101 | 109 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009392044.1 | 1e-116 | PREDICTED: homeobox-leucine zipper protein HOX11-like | ||||
Swissprot | A2Z1U1 | 2e-81 | HOX11_ORYSI; Homeobox-leucine zipper protein HOX11 | ||||
Swissprot | Q67UE2 | 5e-81 | HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11 | ||||
TrEMBL | M0SCP1 | 1e-139 | M0SCP1_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P07740_001 | 1e-140 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5209 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 2e-61 | homeobox from Arabidopsis thaliana |