PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P01850_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Dof
Protein Properties Length: 346aa    MW: 37844.1 Da    PI: 7.4762
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P01850_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.82.4e-3885145262
                 zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                            +ek+l+cprC s +tkfCyynny+++qPr+fC++C+ryWt+GG++rnvPvG+grrk+k+ss
  GSMUA_Achr3P01850_001  85 TEKILPCPRCRSLDTKFCYYNNYNINQPRHFCRNCQRYWTAGGTMRNVPVGAGRRKSKHSS 145
                            67899*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-2882142IPR003851Zinc finger, Dof-type
PfamPF027011.1E-3187143IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.54689143IPR003851Zinc finger, Dof-type
PROSITE patternPS01361091127IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MSENRESAIK LFGMTIPLQL TSSGDDDEDV DKEDATATSQ EPESQDKNES ATCSSEIHKP  60
VSADQEDASS TKNPTKTAAE GVKKTEKILP CPRCRSLDTK FCYYNNYNIN QPRHFCRNCQ  120
RYWTAGGTMR NVPVGAGRRK SKHSSHCRLQ ALRPDTHEPV HYTSLRPNGT VLSFGTDAPV  180
AEKANGCNKN SGDELQQENE GSTAPVPCFS GSPWPYLWAP APPLCASTFP VAFYPAAAYW  240
SWSIPWPSSL PPSSPNYRGL GSSSTASGKH SRDASMIESS IHKTPRRIDD PEEAAKSSKI  300
DAVSNGGLLK AFQPKLYVKN QVLETPLLVH ANPAALSRSL HFQETS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009391156.20.0PREDICTED: cyclic dof factor 1-like
TrEMBLM0SB030.0M0SB03_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P01850_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20993793
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62430.14e-51cycling DOF factor 1