PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P00200_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 451aa    MW: 51254.4 Da    PI: 7.3756
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P00200_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.24.4e-06116140227
                            -S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                            k ++C +f+r G+C  G+ C+F+Hgp
  GSMUA_Achr3P00200_001 116 KSSPCYYFQR-GQCLKGEWCPFIHGP 140
                            789*******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501037.1882049IPR000571Zinc finger, CCCH-type
PfamPF156632.7E-92275No hitNo description
SMARTSM0035632448IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.5125177IPR000571Zinc finger, CCCH-type
SMARTSM003565.35376IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-7111142IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-4114140IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-6114139IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.657114141IPR000571Zinc finger, CCCH-type
PfamPF146082.4119139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MASDCGSEAI RPATAEEEAS KRNTDRVYFL ASPLTCKKGS DCEYRHNQGA RMNPRDCWYW  60
LKRNCLNPKC SFRHPPLDSW FATPMPSSGP LQLLQTAPTT QIPAACAPLS NNINKKSSPC  120
YYFQRGQCLK GEWCPFIHGP HEFSNSVLQQ VAKASTCLAE PPATIKDTQQ NINMQQNAVK  180
LNRDKPKATD HKVLPPNSLN GEPPALPHNP HNFVPTSGAC SVNHQLQPLD EQPVVGRDTD  240
ELLHEYSPGF DVLVEDDIED PDFFHNEDNF GRVSAHSGQH LEPENERHRD YEPMTRIERD  300
PCNGIDKYDN YEQTQGRYVR RMNHQTKRPG RIKQQLSEDF SKDTATKSIR NKPTIGDDTN  360
SPDFAGPKSI AEMKGARING HSYERSIISI IANTNLNRSS IIHISGWRQY RLHNVEKLWQ  420
QFPVSIMINQ EKKECCIYAL SMKSTFPPFH E
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009401195.11e-132PREDICTED: zinc finger CCCH domain-containing protein 32 isoform X2
TrEMBLM0SAI80.0M0SAI8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P00200_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66043241