PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr2P22720_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | LBD | ||||||||
Protein Properties | Length: 91aa MW: 9868.61 Da PI: 8.9259 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 86 | 5.2e-27 | 2 | 91 | 1 | 85 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C++C+vlr++C+++C+++p++ p++q++++ +++k++G++ +l+l++a p++ r+++++sl+yeA+ r+ +P+yGa+g++ ++++ GSMUA_Achr2P22720_001 2 SCNGCRVLRKGCSDGCTIRPCLqwiksPEAQANATLFLAKFYGRAGLLNLMDAGPQNLRPAIFRSLLYEACGRIINPIYGAAGLLCSGTW 91 6***********************************************************************************998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.671 | 1 | 91 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.8E-22 | 2 | 89 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 91 aa Download sequence Send to blast |
MSCNGCRVLR KGCSDGCTIR PCLQWIKSPE AQANATLFLA KFYGRAGLLN LMDAGPQNLR 60 PAIFRSLLYE ACGRIINPIY GAAGLLCSGT W |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021998462.1 | 7e-56 | LOB domain-containing protein 41-like | ||||
Refseq | XP_023769321.1 | 4e-56 | LOB domain-containing protein 41-like | ||||
Swissprot | Q9M886 | 3e-52 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | M0SAB3 | 7e-60 | M0SAB3_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr2P22720_001 | 1e-60 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1235 | 37 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 1e-54 | LOB domain-containing protein 41 |