PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr2P22000_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Dof

Protein Properties

Length: 378aa MW: 40708.4 Da PI: 8.956

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr2P22000_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.9	2.5e-39	86	146	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s +tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrk+k++s GSMUA_Achr2P22000_001 86 PDKILPCPRCKSLDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKSKSTS 146 7899*****************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-30	83	143	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.4E-32	88	144	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.64	90	144	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	92	128	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MSENRDTAIK LFGRTIPLQR CGSGDGGGDN QKDLQVEDTA ARSQDKNECT TSTSEMDKPA 60 SADREDASTK NSVAEEHSKD KAVKKPDKIL PCPRCKSLDT KFCYYNNYNV NQPRHFCKNC 120 QRYWTAGGTM RNVPVGAGRR KSKSTSHFRH IAVSESSLQS VRCNAPESVR YPPKPNGTVL 180 SFGTDAPAKA KPLPSSETSM LSPNENGGQN YQGSAAPIPC FGGSPWPYPW TPAAPLSFPI 240 PFYPAAAYWS CAVPSGAWSV PWLSPLASSH PAAAPNTGNL GKHSRDGSNL NNSSLSTEED 300 GGLAPTTLRI DDPEEAARSS IWTMVGVKRS KNNAVSNGGL LRAFHPKVDV KNHVLVAPSL 360 LHANPAALSR SLNFHETS

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MSENRDTAIK LFGRTIPLQR CGSGDGGGDN QKDLQVEDTA ARSQDKNECT TSTSEMDKPA  60
SADREDASTK NSVAEEHSKD KAVKKPDKIL PCPRCKSLDT KFCYYNNYNV NQPRHFCKNC  120
QRYWTAGGTM RNVPVGAGRR KSKSTSHFRH IAVSESSLQS VRCNAPESVR YPPKPNGTVL  180
SFGTDAPAKA KPLPSSETSM LSPNENGGQN YQGSAAPIPC FGGSPWPYPW TPAAPLSFPI  240
PFYPAAAYWS CAVPSGAWSV PWLSPLASSH PAAAPNTGNL GKHSRDGSNL NNSSLSTEED  300
GGLAPTTLRI DDPEEAARSS IWTMVGVKRS KNNAVSNGGL LRAFHPKVDV KNHVLVAPSL  360
LHANPAALSR SLNFHETS

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009390304.1	0.0	PREDICTED: cyclic dof factor 1-like
TrEMBL	M0SA41	0.0	M0SA41_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr2P22000_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	3e-77	cycling DOF factor 2