PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P20200_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Trihelix
Protein Properties Length: 334aa    MW: 37624.5 Da    PI: 8.3812
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P20200_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.35e-24294186
               trihelix  1 rWtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83
                           +Wt++++++Li+++ +++++ +++        kk++W++vs++m+e gf +sp+qC++k+++lnkryk++++  +k+ +++++++  ++d
  GSMUA_Achr2P20200_001  2 KWTDNMIRLLIKVVYRVGDDGGAAGegeqqaHKKGKWKSVSRAMMENGFCVSPQQCEDKFNDLNKRYKRVNDLLGKGtACRVVENQTLLD 91
                           7*************9999999864223344499********************************************559*********9 PP

               trihelix 84 qle 86
                            ++
  GSMUA_Achr2P20200_001 92 TMD 94
                           998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.0E-202120No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MKWTDNMIRL LIKVVYRVGD DGGAAGEGEQ QAHKKGKWKS VSRAMMENGF CVSPQQCEDK  60
FNDLNKRYKR VNDLLGKGTA CRVVENQTLL DTMDNLYPKA KEEARKLLNS KHLFFREMCA  120
YHHAGGASSC AAPPPPQIPP PHPPDQQQQI CFHHPPPAAA PPAKLPGDSR GRGTFAEEEG  180
MAEEADDDDD RLKRASSQMS ASPPHSLTLS SSSSIQQLRS EMMAVSGGGE QQQQQWLRRK  240
ATELEEQRVA YQGRAFQLER QRFKWLRFSS NKEREMERMK LDNERLRLEN DRMLLLLRQK  300
ELELVHGGGA LSTVTVISVQ QQHISNADHA AVGN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009390139.11e-173PREDICTED: uncharacterized protein LOC103976598
RefseqXP_018677580.11e-173PREDICTED: uncharacterized protein LOC103976598
TrEMBLM0S9L10.0M0S9L1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P20200_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119443138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.11e-50sequence-specific DNA binding transcription factors