PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr2P15550_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

BES1

Protein Properties

Length: 306aa MW: 32857.5 Da PI: 8.913

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr2P15550_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	208.2	2.2e-64	3	150	2	149
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasa 88 + r+ptw+ErEnn+rRERrRRaiaakiyaGLR++Gny+lpk++DnneVlkALc eAGw+ve+DGttyrkg+kp+ ++++++g s+s GSMUA_Achr2P15550_001 3 SRSRMPTWRERENNRRRERRRRAIAAKIYAGLRMYGNYRLPKHCDNNEVLKALCDEAGWIVEPDGTTYRKGCKPPaDHMDVVGGSTSP 90 678**********************************************************************9******** PP DUF822 89 spesslqsslkssalaspvesysaspksssfpspssldsislasaasllpvlsvlslvsss 149 sp ss q s+ +s+ +sp++s+ asp+sss+ + ++ +si+ a+a+sl+p+l++ls++sss GSMUA_Achr2P15550_001 91 SPYSSNQPSPCASYNPSPASSSYASPASSSYIATAN-NSINGADANSLIPWLKNLSSASSS 150 *9977777777777777777777777777666.44555567********998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	5.1E-68	4	145	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MTSRSRMPTW RERENNRRRE RRRRAIAAKI YAGLRMYGNY RLPKHCDNNE VLKALCDEAG 60 WIVEPDGTTY RKGCKPPADH MDVVGGSTSP SPYSSNQPSP CASYNPSPAS SSYASPASSS 120 YIATANNSIN GADANSLIPW LKNLSSASSS GPSKILHQHP FYMHGGSISA PVTPPLSSPT 180 ASTPQIKSDW DDPNSRLPLV NTSYTFLPNS TPPSPGRKII PDPGWIAGLQ IDTGPPSSPT 240 FSLVSSNPQG FSGGGSSRMW TPGQSGTSSP VMPVLVKPWE GERIHEECGS DDLELTLGGS 300 RTRADA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	5e-24	6	76	372	442	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	5e-24	6	76	372	442	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	5e-24	6	76	372	442	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	5e-24	6	76	372	442	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
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Functional Description ? help Back to Top
Source	Description
UniProt	May function in brassinosteroid signaling. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00248	DAP	Transfer from AT1G78700	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004070	1e-63	AP004070.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1705_E12.
GenBank	AP014958	1e-63	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	1e-63	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009388695.1	0.0	PREDICTED: protein BZR1 homolog 3-like
Swissprot	Q5Z9E5	1e-104	BZR3_ORYSJ; Protein BZR1 homolog 3
TrEMBL	M0S896	0.0	M0S896_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr2P15550_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1366	38	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78700.1	3e-71	BES1/BZR1 homolog 4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]