PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P11660_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 110aa    MW: 12175.8 Da    PI: 10.3271
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P11660_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000211739123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           y C+ C + F++   L  H+++H
  GSMUA_Achr2P11660_001 17 YCCSFCRREFKSAQALGGHMNVH 39
                           88*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.68E-71444No hitNo description
Gene3DG3DSA:3.30.160.602.2E-41543IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.6E-61640IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.6971744IPR007087Zinc finger, C2H2
PROSITE patternPS0002801839IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MYSQLRRGGF TWPSRTYCCS FCRREFKSAQ ALGGHMNVHR GDKARPRQSP PSNPKLGSKA  60
VPCSNDAFSS MISPSIHLSC SPPLASSVDD LKTMEEDRGN EVLKTSKGRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-111239229superman protein
2l1o_A2e-111239229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018677627.16e-78PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLM0S7574e-76M0S757_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P11660_0016e-77(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46673065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.12e-18C2H2 family protein