PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P11520_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Dof
Protein Properties Length: 465aa    MW: 52232.8 Da    PI: 8.8062
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P11520_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof113.11.2e-35145204261
                 zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                            ++k+l+cprC+s+ tkf yynny+++qPr+fCk+C+ryWt+GG++rnvP G+grrk+k+ 
  GSMUA_Achr2P11520_001 145 PDKILPCPRCNSMGTKFFYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPFGAGRRKRKSI 204
                            7899****************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-28142202IPR003851Zinc finger, Dof-type
PfamPF027011.3E-29147203IPR003851Zinc finger, Dof-type
PROSITE profilePS5088426.916149203IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MSLPVNAEGG VPGAKSGPGD FRLELDWIKA PRIQRFVYNP FVFILMRSLK YATELILQDN  60
YLYYFDIMFQ DASKEVTNVQ VNDISAAAPD EEDEGSPISS SSLTSSNEED GKTSIADEKK  120
AVKNTVEDTK TEVDCSGPEK VLKKPDKILP CPRCNSMGTK FFYYNNYNVN QPRHFCKNCQ  180
RYWTAGGTMR NVPFGAGRRK RKSITRHADS GSTICQESRE EPSRASSAAA SNILENGSAE  240
NAIHKQQSGM HVYCNGLAPL TQLQCYPESS WSYPWRPAWS NVAAMEAGRF WGFTTWSNGT  300
WNIPWVGSNS GFISSSSSSS GSGCSGNDSP MLGKHSRDAT LQSEEKTEKS IWVPKTLRIG  360
DPEFNMGCPR YQALYRRFLR EKLTAKVACA SHEAIRGKDQ DCQHHLRLFR NPCCKYEKKV  420
FVSKFLLQRK FIISSAVTGL ANQQRKIQLI NVEQKEWLRN SSTES
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009416342.11e-108PREDICTED: cyclic dof factor 3-like
TrEMBLM0S7430.0M0S743_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P11520_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143438116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.23e-45cycling DOF factor 2