PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr2P11240_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

LBD

Protein Properties

Length: 236aa MW: 24406.7 Da PI: 7.4503

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr2P11240_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.2	3.2e-39	27	127	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasn +kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ GSMUA_Achr2P11240_001 27 PCGACKFLRRKCVTGCIFAPYFNSEQgAAHFAAVHKVFGASNASKLLLHIPAHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQV 114 7*********************9989******************************************************** PP DUF260 88 eqlkaelallkee 100 +l+ael+ l+++ GSMUA_Achr2P11240_001 115 VNLHAELSCLQAH 127 ******99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.347	26	128	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.2E-38	27	125	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MSGSIGPNGG GGGGGGGGSG GGGGGGPCGA CKFLRRKCVT GCIFAPYFNS EQGAAHFAAV 60 HKVFGASNAS KLLLHIPAHK RLDAVVTICY EAQARLRDPV YGCVAHIFAL QQQVVNLHAE 120 LSCLQAHLAT LELPTPPPSL ASPIPFSMSD LSSSSTLPST ADLSTLFDPP LLPSWPLQQQ 180 QRPTLFMQQR STSTRSPSES SGCGGGDLQE LARELLGRHC LGDVTAEPGV QESKSI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-37	23	128	7	111	LOB family transfactor Ramosa2.1
5ly0_B	9e-37	23	128	7	111	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269\|PubMed:19088331}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018677699.1	1e-171	PREDICTED: LOB domain-containing protein 18-like
Refseq	XP_018677700.1	1e-171	PREDICTED: LOB domain-containing protein 18-like
Refseq	XP_018677702.1	1e-171	PREDICTED: LOB domain-containing protein 18-like
Swissprot	O81323	5e-71	LBD30_ARATH; LOB domain-containing protein 30
TrEMBL	M0S715	1e-170	M0S715_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr2P11240_001	1e-170	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3346	37	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45420.1	2e-58	LOB domain-containing protein 18

Publications ? help Back to Top
Rast-Somssich MI, et al. The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin. J. Exp. Bot., 2017. 68(11): p. 2741-2755 [PMID:28472464] Liu C,Yu H,Li L SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet., 2019. 15(1): p. e1007928 [PMID:30657769]