PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P08590_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 266aa    MW: 29647.3 Da    PI: 9.6322
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P08590_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.52.1e-12104151355
                            HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            + h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  GSMUA_Achr2P08590_001 104 QEHVMAERKRREKLTQRFIALSAVVPGL-----KKMDKASVLGDAIKYLKQLQ 151
                            5799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.345101150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-10104151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-17104170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-17105168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.54E-12106155No hitNo description
SMARTSM003533.7E-15107156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MDQSSFKRWE LSALDQFSAQ QLEVALGSPS SESYTSLPSC HPPNEIVTAA WHSDLHDGAA  60
ATAKMKAEMK DVLVLDGSKR KWDIMIRHGT KRPSMGNSSA SHNQEHVMAE RKRREKLTQR  120
FIALSAVVPG LKKMDKASVL GDAIKYLKQL QEKVKSLEDQ VAKRNTESTV LAKRSYDERQ  180
RCGSLLVEIE ARVFQKSILI KIHCENQKGV LVKALSEIEK LHLSVICTSA MSFAISSLDI  240
TVMTQASLEF CMTAKDLVKK LNSALM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-15106154957Transcription factor MYC2
5gnj_B2e-15106154957Transcription factor MYC2
5gnj_E2e-15106154957Transcription factor MYC2
5gnj_F2e-15106154957Transcription factor MYC2
5gnj_G2e-15106154957Transcription factor MYC2
5gnj_I2e-15106154957Transcription factor MYC2
5gnj_M2e-15106154957Transcription factor MYC2
5gnj_N2e-15106154957Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109114ERKRRE
2110115RKRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009389452.10.0PREDICTED: transcription factor bHLH25-like isoform X1
SwissprotQ9T0723e-51BH025_ARATH; Transcription factor bHLH25
TrEMBLM0S6A00.0M0S6A0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P08590_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-53bHLH family protein