PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr2P06770_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bZIP

Protein Properties

Length: 478aa MW: 53100.7 Da PI: 6.3645

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr2P06770_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.2	1.2e-10	172	213	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka+i++Le +L++ ++L GSMUA_Achr2P06770_001 172 AKTLRRLAQNREAARKSRLRKKAYIQQLESSRIKLTQLEQDL 213 5889*************************9777777666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.9E-6	169	249	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.197	171	215	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.2E-8	172	214	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.5E-7	173	215	No hit	No description
CDD	cd14708	6.91E-22	173	225	No hit	No description
Gene3D	G3DSA:1.20.5.170	6.0E-8	174	216	No hit	No description
PROSITE pattern	PS00036	0	176	191	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.0E-29	251	325	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence Send to blast
MENQSAGETG LSESGPSSRP MTHGVNGITP SATNFFDQEG AAYFGGLEEA LMHGVAGIRS 60 DEERKSLFAS RPPTLEIFPS WPMRFQQIPK WNSQPEESAD SGSVQNTISQ LDSESPVSRK 120 ASSEQSEEQQ QGTMAGDGAP NQQLRTQEKV RIHVRNVVGG SSSEKDGKVL DAKTLRRLAQ 180 NREAARKSRL RKKAYIQQLE SSRIKLTQLE QDLQRARAQG LFLGGGSAGD TISSVFDMEY 240 SRWLEENYKK MMELRGGLQA HRQDGDLRVT VDECLALYDE LFQLKATAAR SDVFHVLTGL 300 WTTPAERCFL WMGGFRPSEL LKIVLPQLDP LTEQQVAGIC SLQQSCQQAE EALSQGLEQF 360 LRSLADTVTG DSLVESSSTG NYMSQMAIAL GKLANLEGFL RQADNLRQQT LHQMHRILTI 420 RQAARCFLAI GEYHSRLRAL SSLWASRPRE NSINESAMPL TADLQIVHQP LQSHFPAF

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence Send to blast

MENQSAGETG LSESGPSSRP MTHGVNGITP SATNFFDQEG AAYFGGLEEA LMHGVAGIRS  60
DEERKSLFAS RPPTLEIFPS WPMRFQQIPK WNSQPEESAD SGSVQNTISQ LDSESPVSRK  120
ASSEQSEEQQ QGTMAGDGAP NQQLRTQEKV RIHVRNVVGG SSSEKDGKVL DAKTLRRLAQ  180
NREAARKSRL RKKAYIQQLE SSRIKLTQLE QDLQRARAQG LFLGGGSAGD TISSVFDMEY  240
SRWLEENYKK MMELRGGLQA HRQDGDLRVT VDECLALYDE LFQLKATAAR SDVFHVLTGL  300
WTTPAERCFL WMGGFRPSEL LKIVLPQLDP LTEQQVAGIC SLQQSCQQAE EALSQGLEQF  360
LRSLADTVTG DSLVESSSTG NYMSQMAIAL GKLANLEGFL RQADNLRQQT LHQMHRILTI  420
RQAARCFLAI GEYHSRLRAL SSLWASRPRE NSINESAMPL TADLQIVHQP LQSHFPAF

Functional Description ? help Back to Top
Source	Description
UniProt	Required for the formation of the blade-sheath boundary in leaves. Promotes flowering. {ECO:0000269\|PubMed:9490265}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM950501	7e-42	AM950501.1 Musa balbisiana microsatellite DNA, clone contig0002.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009389638.1	0.0	PREDICTED: transcription factor TGA2.2-like isoform X1
Swissprot	O49067	1e-165	LG2_MAIZE; Transcription factor LG2
TrEMBL	M0S5R8	0.0	M0S5R8_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr2P06770_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4444	36	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-139	bZIP family protein

Publications ? help Back to Top
Walsh J,Freeling M The liguleless2 gene of maize functions during the transition from the vegetative to the reproductive shoot apex. Plant J., 1999. 19(4): p. 489-95 [PMID:10504571] Schnable PS, et al. The B73 maize genome: complexity, diversity, and dynamics. Science, 2009. 326(5956): p. 1112-5 [PMID:19965430]