PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr2P06250_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 226aa MW: 25766.1 Da PI: 6.5229 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.6 | 4.5e-30 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rienk+nrqvtfskRr g+lKKA+ELS+LCdaeva+i+fss+g+l+e++s GSMUA_Achr2P06250_001 10 RIENKINRQVTFSKRRSGLLKKAYELSILCDAEVALIVFSSRGRLFEFCS 59 8***********************************************96 PP | |||||||
2 | K-box | 88.4 | 1.4e-29 | 78 | 165 | 5 | 92 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 s ++++++++ +qe+ k+k +++ Lqr+qR++lG+dL+ L++keL qLe+q+e+sl++iRs+K++++++q+ +l+ k +e+ en GSMUA_Achr2P06250_001 78 SEAMVSSNDTQNTYQEYLKMKTRVDYLQRSQRNFLGQDLDALNIKELDQLENQIETSLRHIRSTKTQVIIDQLTDLKYKLEEVGAENS 165 34448999**************************************************************************998885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.646 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.7E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.5E-31 | 2 | 77 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.81E-40 | 2 | 76 | No hit | No description |
PRINTS | PR00404 | 1.0E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.7E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.1E-24 | 84 | 165 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.715 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MGRGRVELRR IENKINRQVT FSKRRSGLLK KAYELSILCD AEVALIVFSS RGRLFEFCSS 60 ASLLKTIEKY RRCSYNASEA MVSSNDTQNT YQEYLKMKTR VDYLQRSQRN FLGQDLDALN 120 IKELDQLENQ IETSLRHIRS TKTQVIIDQL TDLKYKLEEV GAENSLSLSW LSGGSHSADE 180 PPRIEDFFQP PECDPSSQTG CSQVCTDLSN SETMLQDVTG LVARLM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 3e-19 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 3e-19 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_R | 3e-19 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_S | 3e-19 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
5f28_A | 3e-19 | 1 | 60 | 1 | 60 | MEF2C |
5f28_B | 3e-19 | 1 | 60 | 1 | 60 | MEF2C |
5f28_C | 3e-19 | 1 | 60 | 1 | 60 | MEF2C |
5f28_D | 3e-19 | 1 | 60 | 1 | 60 | MEF2C |
6c9l_A | 3e-19 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_B | 3e-19 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_C | 3e-19 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_D | 3e-19 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_E | 3e-19 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_F | 3e-19 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MADS-box transcription factor that acts redundantly with J2 to control meristem maturation and inflorescence architecture. {ECO:0000269|PubMed:28528644}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018676547.1 | 1e-167 | PREDICTED: MADS-box transcription factor 1-like isoform X3 | ||||
Swissprot | Q7Y040 | 7e-86 | EJ2_SOLLC; MADS-box protein EJ2 | ||||
TrEMBL | M0S5L6 | 1e-166 | M0S5L6_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr2P06250_001 | 1e-166 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2221 | 32 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24260.3 | 1e-72 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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