PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr2P04940_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | C2H2 | ||||||||
Protein Properties | Length: 132aa MW: 14479.2 Da PI: 6.9463 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.6 | 0.00043 | 30 | 52 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H GSMUA_Achr2P04940_001 30 FRCTYCQRKFHSSQALGGHQNAH 52 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 5.1E-4 | 26 | 55 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.03E-6 | 26 | 57 | No hit | No description |
Pfam | PF13912 | 4.6E-6 | 29 | 52 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.177 | 30 | 57 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 32 | 52 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
MEFELEKDDD DVNLELGLEP SSMPQPERVF RCTYCQRKFH SSQALGGHQN AHKLERSLAK 60 RNREVSLAMR SHAVGQIQTV VASTSLDGRF VRKEEAVTLT PWTRGGADGK GRGGGADDKA 120 GIAGDIDLSL RL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009384816.1 | 5e-94 | PREDICTED: zinc finger protein STAMENLESS 1-like | ||||
Refseq | XP_018675700.1 | 5e-94 | PREDICTED: zinc finger protein STAMENLESS 1-like | ||||
TrEMBL | M0S585 | 1e-92 | M0S585_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr2P04940_001 | 2e-93 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP183 | 36 | 274 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57520.1 | 1e-19 | zinc finger protein 2 |