PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P27000_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GRF
Protein Properties Length: 424aa    MW: 46291.4 Da    PI: 6.9198
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P27000_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC69.73.7e-2276119144
                    WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                            d+epgrCrRtDGKkWRCs+++++++ +CErHl+rgr+rsrk++e
  GSMUA_Achr1P27000_001  76 DPEPGRCRRTDGKKWRCSKDAVADQRYCERHLNRGRHRSRKRVE 119
                            79****************************************98 PP
2QLQ43.78.4e-16641136
                    QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                           ++F ++Q+ +L++Q+l+yKy++a + +Pp+Ll +i+
  GSMUA_Achr1P27000_001  6 GPFAPSQWLELERQALIYKYIVAYVAIPPNLLIPIR 41
                           59********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.0E-6642IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166617.797742IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.7E-11741IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.50476120IPR014977WRC domain
PfamPF088794.8E-1977119IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MHGVRGPFAP SQWLELERQA LIYKYIVAYV AIPPNLLIPI RTSLSPSGFS PFSVGSFGSS  60
TLGWGSYHQR YTGNDDPEPG RCRRTDGKKW RCSKDAVADQ RYCERHLNRG RHRSRKRVEG  120
CTRHGSEAIA IVPLQSASAI SGSRTSDNLP TSQHQAANLE TNINGCCPAQ FDRMPMSKGN  180
VNERAQESEG LSMRGFLRSR PMSDLFPVSE EHNPFEETPS GVKLGHVSMD SLFNDSSSTS  240
SDNISSYITT ANLNDQQKRP HPLQCFNDES DHSNISWSGV EMQSDRTQSS ISFPMACSPC  300
NSSAEYDPIN VGLRVGVPCK VSKCQTGWLP ISPESSMAGP LGEVLNRTSS TIKQQINFLT  360
DTCDFSPWLE SSPTGVLQKV LFGSVSSSTG SSPGAENSKA HKSNGSLCED VFGSTLEDLH  420
TIPS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009419423.10.0PREDICTED: growth-regulating factor 6-like isoform X1
TrEMBLM0S3F70.0M0S3F7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P27000_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42903568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.12e-53growth-regulating factor 1