PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P23840_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GRF
Protein Properties Length: 359aa    MW: 39284.6 Da    PI: 9.5635
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P23840_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC79.14.1e-2584128145
                    WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                            d+epgrCrRtDGKkWRCs+++++g+k+CErH+hrgr+rsrk++e+
  GSMUA_Achr1P23840_001  84 DPEPGRCRRTDGKKWRCSKDAYPGSKYCERHMHRGRNRSRKPVES 128
                            79****************************************986 PP
2QLQ63.36.2e-221651237
                    QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                           +FTa+Q+q+L++Q+l++KyL+a++PvPpeL+ +i++
  GSMUA_Achr1P23840_001 16 PFTATQWQELEHQALILKYLMAGVPVPPELIIPIRR 51
                           9*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.5E-131551IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.5461651IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.9E-161650IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166726.04684128IPR014977WRC domain
PfamPF088792.7E-2185127IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MNSFAAAAAA VGCRPPFTAT QWQELEHQAL ILKYLMAGVP VPPELIIPIR RSFEALPGRY  60
YHPSRKRPTP SYLSYYSYYG KKPDPEPGRC RRTDGKKWRC SKDAYPGSKY CERHMHRGRN  120
RSRKPVESQT VSPSQTSSST LTSLSPSGSN AGGTGVGSLR SITLQSIAGP SNAQNSCLGG  180
GASSSRLPMD TDSLGNRYSS GLKPDVDERS FFSEASGTAR ALGVDSSVDS SWLLMPPQAS  240
SFPMSKSQDL SILHSAYSQL QTVQDLGRAK MSSLSRQEQQ QHSFFGSEFG SSEPVKHETQ  300
FLRPFFDEWP KTRDAWSDLE EDRSNRTSFS TTQLSISIPM AASDFSSTSS RSPNGGSLS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009415171.10.0PREDICTED: growth-regulating factor 5-like
SwissprotQ6AWY41e-104GRF5_ORYSJ; Growth-regulating factor 5
TrEMBLM0S2J10.0M0S2J1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P23840_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110462431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.11e-43growth-regulating factor 5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]