PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P21950_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family AP2
Protein Properties Length: 563aa    MW: 61366.9 Da    PI: 6.0956
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P21950_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2491.5e-15249308155
                    AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            s+y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  GSMUA_Achr1P21950_001 249 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 308
                            78*******************655454478446*************************98 PP
2AP248.52.2e-15351402155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  GSMUA_Achr1P21950_001 351 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 402
                            78****************988532...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.14E-20249318No hitNo description
PfamPF008475.2E-12249308IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-16249318IPR016177DNA-binding domain
PROSITE profilePS5103218.558250316IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-15250317IPR001471AP2/ERF domain
SMARTSM003803.7E-29250322IPR001471AP2/ERF domain
PRINTSPR003674.3E-6251262IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-18351411IPR016177DNA-binding domain
PfamPF008474.1E-10351402IPR001471AP2/ERF domain
CDDcd000183.16E-24351411No hitNo description
Gene3DG3DSA:3.30.730.108.1E-19352410IPR001471AP2/ERF domain
PROSITE profilePS5103219.164352410IPR001471AP2/ERF domain
SMARTSM003808.6E-34352416IPR001471AP2/ERF domain
PRINTSPR003674.3E-6392412IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MSGWLGFSLS SSSRGDGSCC CEEDQFGGGG EGSGGGGGGG GGGDDGRVEL GFASSNPLVL  60
MPLRSDGSIC LMEPPPLRHT PYWKYGAIAT TTDGSSNPEE EGPKFEDFLG GYSEHTNEES  120
PNLQQPISHF HAMYPGINVN MPPSIIPAAE GRTEEDVHDP YHYIQSFHPF QDPTTLRPSP  180
LATDPIYSVG TDGSISISGM KSWLRQNQYA PEKQPADGAA DDPSRLNAKS AARETVPRKS  240
IETFGQRTSQ YRGVTRHRWT GRYEAHLWDN SCRKEGQTRK GRQVYLGGYD KEEKAARAYD  300
LAALKYWGPT THTNLPLSTY EKELEEMKNM SRQEFVANLR RKSSGFSRGA SVYRGVTRHH  360
QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF RGPNAVTNFD IGRYDVKRIC  420
SSNHLIGGDL AKRTPPKDSS PMSLETDHRP CPAVTKSGIA GAEDDFSDML CNPKLDDTSN  480
RLLLAEVAPV VSSSPGNPIS YHSMCGDFSQ AFLYPTAMKY ECGDGSSNGG NGDGGSMNWM  540
VAAARPTELP AVNQLPMFAL WND
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009413817.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1 isoform X2
TrEMBLM0S2030.0M0S203_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P21950_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-124AP2 family protein