PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr1P21540_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

CAMTA

Protein Properties

Length: 243aa MW: 28198.1 Da PI: 6.9426

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr1P21540_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	184.4	1.2e-57	22	138	2	118
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahse 89 ++ ++rwl++ ei++iL+n++k++++ +++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LKvg+v++l+cyYah+e GSMUA_Achr1P21540_001 22 VEARRRWLRPAEICEILQNYRKFRIAPGPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKVGSVDMLHCYYAHGE 109 66799********************************************************************************* PP CG-1 90 enptfqrrcywlLeeelekivlvhylevk 118 en++fqrr+yw+Le +l +ivlvhy+evk GSMUA_Achr1P21540_001 110 ENEKFQRRSYWMLEADLMNIVLVHYREVK 138 ************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	81.586	17	143	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	8.2E-78	20	138	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	8.6E-51	23	136	IPR005559	CG-1 DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MGEDRYKECG LLSCLYIEQI LVEARRRWLR PAEICEILQN YRKFRIAPGP PNRPPSGSLF 60 LFDRKVLRYF RKDGHNWRKK KDGKTVKEAH ERLKVGSVDM LHCYYAHGEE NEKFQRRSYW 120 MLEADLMNIV LVHYREVKVD KTSRSLTRDV EEVVQDTQMD NPIVEEVVQA MQMDNPITSN 180 SATSQSQLAS QSFGVDSPSS AHTSEYEDAE LAYLKPNSLH HIVIKQVPDT TLSLRCGSMM 240 IDE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25627216, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:25627216}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018685439.1	1e-170	PREDICTED: calmodulin-binding transcription activator 2-like isoform X1
Refseq	XP_018685441.1	1e-170	PREDICTED: calmodulin-binding transcription activator 2-like isoform X1
Refseq	XP_018685446.1	1e-170	PREDICTED: calmodulin-binding transcription activator 2-like isoform X1
Refseq	XP_018685447.1	1e-170	PREDICTED: calmodulin-binding transcription activator 2-like isoform X1
Refseq	XP_018685450.1	1e-170	PREDICTED: calmodulin-binding transcription activator 2-like isoform X1
Swissprot	Q6NPP4	5e-70	CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBL	M0S1W2	0.0	M0S1W2_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr1P21540_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15485	8	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	1e-71	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]