PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr1P21540_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | CAMTA | ||||||||
Protein Properties | Length: 243aa MW: 28198.1 Da PI: 6.9426 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 184.4 | 1.2e-57 | 22 | 138 | 2 | 118 |
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahse 89 ++ ++rwl++ ei++iL+n++k++++ +++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LKvg+v++l+cyYah+e GSMUA_Achr1P21540_001 22 VEARRRWLRPAEICEILQNYRKFRIAPGPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKVGSVDMLHCYYAHGE 109 66799*********************************************************************************** PP CG-1 90 enptfqrrcywlLeeelekivlvhylevk 118 en++fqrr+yw+Le +l +ivlvhy+evk GSMUA_Achr1P21540_001 110 ENEKFQRRSYWMLEADLMNIVLVHYREVK 138 **************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 81.586 | 17 | 143 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 8.2E-78 | 20 | 138 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 8.6E-51 | 23 | 136 | IPR005559 | CG-1 DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MGEDRYKECG LLSCLYIEQI LVEARRRWLR PAEICEILQN YRKFRIAPGP PNRPPSGSLF 60 LFDRKVLRYF RKDGHNWRKK KDGKTVKEAH ERLKVGSVDM LHCYYAHGEE NEKFQRRSYW 120 MLEADLMNIV LVHYREVKVD KTSRSLTRDV EEVVQDTQMD NPIVEEVVQA MQMDNPITSN 180 SATSQSQLAS QSFGVDSPSS AHTSEYEDAE LAYLKPNSLH HIVIKQVPDT TLSLRCGSMM 240 IDE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018685439.1 | 1e-170 | PREDICTED: calmodulin-binding transcription activator 2-like isoform X1 | ||||
Refseq | XP_018685441.1 | 1e-170 | PREDICTED: calmodulin-binding transcription activator 2-like isoform X1 | ||||
Refseq | XP_018685446.1 | 1e-170 | PREDICTED: calmodulin-binding transcription activator 2-like isoform X1 | ||||
Refseq | XP_018685447.1 | 1e-170 | PREDICTED: calmodulin-binding transcription activator 2-like isoform X1 | ||||
Refseq | XP_018685450.1 | 1e-170 | PREDICTED: calmodulin-binding transcription activator 2-like isoform X1 | ||||
Swissprot | Q6NPP4 | 5e-70 | CMTA2_ARATH; Calmodulin-binding transcription activator 2 | ||||
TrEMBL | M0S1W2 | 0.0 | M0S1W2_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr1P21540_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15485 | 8 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64220.2 | 1e-71 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Publications ? help Back to Top | |||
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