PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P21540_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family CAMTA
Protein Properties Length: 243aa    MW: 28198.1 Da    PI: 6.9426
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P21540_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1184.41.2e-57221382118
                   CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahse 89 
                            ++ ++rwl++ ei++iL+n++k++++  +++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LKvg+v++l+cyYah+e
  GSMUA_Achr1P21540_001  22 VEARRRWLRPAEICEILQNYRKFRIAPGPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKVGSVDMLHCYYAHGE 109
                            66799*********************************************************************************** PP

                   CG-1  90 enptfqrrcywlLeeelekivlvhylevk 118
                            en++fqrr+yw+Le +l +ivlvhy+evk
  GSMUA_Achr1P21540_001 110 ENEKFQRRSYWMLEADLMNIVLVHYREVK 138
                            **************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143781.58617143IPR005559CG-1 DNA-binding domain
SMARTSM010768.2E-7820138IPR005559CG-1 DNA-binding domain
PfamPF038598.6E-5123136IPR005559CG-1 DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGEDRYKECG LLSCLYIEQI LVEARRRWLR PAEICEILQN YRKFRIAPGP PNRPPSGSLF  60
LFDRKVLRYF RKDGHNWRKK KDGKTVKEAH ERLKVGSVDM LHCYYAHGEE NEKFQRRSYW  120
MLEADLMNIV LVHYREVKVD KTSRSLTRDV EEVVQDTQMD NPIVEEVVQA MQMDNPITSN  180
SATSQSQLAS QSFGVDSPSS AHTSEYEDAE LAYLKPNSLH HIVIKQVPDT TLSLRCGSMM  240
IDE
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018685439.11e-170PREDICTED: calmodulin-binding transcription activator 2-like isoform X1
RefseqXP_018685441.11e-170PREDICTED: calmodulin-binding transcription activator 2-like isoform X1
RefseqXP_018685446.11e-170PREDICTED: calmodulin-binding transcription activator 2-like isoform X1
RefseqXP_018685447.11e-170PREDICTED: calmodulin-binding transcription activator 2-like isoform X1
RefseqXP_018685450.11e-170PREDICTED: calmodulin-binding transcription activator 2-like isoform X1
SwissprotQ6NPP45e-70CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLM0S1W20.0M0S1W2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P21540_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15485817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.21e-71Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]