PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr1P20970_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | LBD | ||||||||
Protein Properties | Length: 251aa MW: 26717.5 Da PI: 10.1509 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 97.6 | 1.3e-30 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +C++C++lr++C+++C+++p++ p++q++++a+++k++G++ +++l++a e+ r+++++sl++eA+ r+ +PvyG+vg+++++ GSMUA_Achr1P20970_001 4 SCNGCRILRKACTDGCTIRPCLqwiknPEAQANATAFLAKFYGRAGLVNLINAGTEHLRPAIFRSLLFEACGRIVNPVYGSVGLLWSG 91 6*************************************************************************************** PP DUF260 84 qqqleqlkaelallke 99 ++ql+q+++e++l ++ GSMUA_Achr1P20970_001 92 SWQLCQAAVEAVLKGA 107 **********998766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.426 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.0E-25 | 4 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MRKSCNGCRI LRKACTDGCT IRPCLQWIKN PEAQANATAF LAKFYGRAGL VNLINAGTEH 60 LRPAIFRSLL FEACGRIVNP VYGSVGLLWS GSWQLCQAAV EAVLKGAPII QISSDSAAGA 120 IPAFKAHDIR HVSKNLSAGG VPGDLHEVAR KSRTRFKRSA GSPAALVVSK PGLFRRAARQ 180 ETEEEASRED GSAFSAEGSH VILGEPEGVR LDLRLGLEPE NRTGERGAEA KVRGASPSDA 240 RPVGPRLSLA A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009413952.1 | 0.0 | PREDICTED: LOB domain-containing protein 41-like | ||||
Swissprot | Q9M886 | 3e-73 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | M0S1Q5 | 0.0 | M0S1Q5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr1P20970_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1235 | 37 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 5e-74 | LOB domain-containing protein 41 |