PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_Achr1P03930_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 257aa MW: 27462.9 Da PI: 9.6454 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.4 | 1.5e-38 | 24 | 83 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 kekal+cprC+stntkfCyynnysl+qPryfC CrryWt+GG+lrnvPvGgg+rknk++ GSMUA_Achr1P03930_001 24 KEKALDCPRCNSTNTKFCYYNNYSLTQPRYFCGDCRRYWTHGGSLRNVPVGGGSRKNKNK 83 68899****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-25 | 12 | 76 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.3E-32 | 26 | 82 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.509 | 28 | 82 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 30 | 66 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 257 aa Download sequence Send to blast |
MAGNSICTAN RPQQAVERKV RLHKEKALDC PRCNSTNTKF CYYNNYSLTQ PRYFCGDCRR 60 YWTHGGSLRN VPVGGGSRKN KNKKLFSSSS TSSTTVSTLK KLTPAGLVSP PVSLSSTPGA 120 PKLYEGHDLN LAFPHHSPPE QHKFRSSESG RSRDGNSNSI DGRNTCTAVV ADSITELLRS 180 GIPARGLIAP FTPTVTMEYP CGPGLQDLGP PTLNLTLVGF NASVGGGSSS GHGSLQGLQK 240 CSCGKLLHHL EDSSANL |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AM950399 | 3e-92 | AM950399.1 Musa acuminata subsp. burmannicoides microsatellite DNA, clone contig0051. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009389460.1 | 0.0 | PREDICTED: dof zinc finger protein DOF4.6-like isoform X2 | ||||
Refseq | XP_018686763.1 | 0.0 | PREDICTED: dof zinc finger protein DOF4.6-like isoform X1 | ||||
Swissprot | Q9SXG8 | 4e-37 | DOF1_ORYSJ; Dof zinc finger protein 1 | ||||
TrEMBL | M0RWV1 | 0.0 | M0RWV1_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr1P03930_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2369 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G64620.1 | 3e-33 | Dof family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|