PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr1P03770_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 260aa MW: 29179 Da PI: 9.3496 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 59.7 | 1.4e-18 | 1 | 112 | 1 | 103 |
GAGA_bind 1 mdddgsre..rnkg.yye........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalver 77 mdd g+re r+k+ +y+ p+++lken++++l+ +aer+++++er++a++ekkaa+ erdma+lqrd+a+aern a++er GSMUA_Achr1P03770_001 1 MDDVGQREngRHKTdQYRtahaqwmlPQHQLKENQTIKLL--MAEREKALQERDMAITEKKAALVERDMAYLQRDAAVAERNSAIIER 86 999999988999999999999999997789**99888886..88******************************************** PP GAGA_bind 78 dnkllalllvenslasalpvgvqvls 103 dn++ al++++++ +s + ++ + + GSMUA_Achr1P03770_001 87 DNAIGALEYARENGMSGNCATGKQTR 112 *******9988776654433333333 PP | |||||||
2 | GAGA_bind | 266 | 2e-81 | 129 | 260 | 165 | 301 |
GAGA_bind 165 kkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrg 252 ++ kk + ++ +k+ + ++++e+ks+dl+ln+vs+D++t+PvPvCsCtG+ +qCYkWGnGGWqSaCCttt+S+yPLPv + +r+ GSMUA_Achr1P03770_001 129 RRSKKVG----EDLNKQV-SLTKHHEWKSQDLGLNQVSFDDTTMPVPVCSCTGKYQQCYKWGNGGWQSACCTTTLSMYPLPVIPSKRH 211 2222222....2222222.355789*************************************************************** PP GAGA_bind 253 aRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 aR+agrKmS++af+klL++LaaeGydls pvDLkdhWAkHGtn+++ti+ GSMUA_Achr1P03770_001 212 ARVAGRKMSGSAFRKLLSRLAAEGYDLSLPVDLKDHWAKHGTNRYITIK 260 ************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06217 | 2.9E-10 | 1 | 119 | IPR010409 | GAGA-binding transcriptional activator |
SMART | SM01226 | 3.3E-128 | 1 | 260 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 2.2E-78 | 115 | 260 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0050793 | Biological Process | regulation of developmental process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MDDVGQRENG RHKTDQYRTA HAQWMLPQHQ LKENQTIKLL MAEREKALQE RDMAITEKKA 60 ALVERDMAYL QRDAAVAERN SAIIERDNAI GALEYARENG MSGNCATGKQ TRETPTNEAS 120 PDSGGSAPRR SKKVGEDLNK QVSLTKHHEW KSQDLGLNQV SFDDTTMPVP VCSCTGKYQQ 180 CYKWGNGGWQ SACCTTTLSM YPLPVIPSKR HARVAGRKMS GSAFRKLLSR LAAEGYDLSL 240 PVDLKDHWAK HGTNRYITIK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009389670.1 | 1e-180 | PREDICTED: barley B recombinant-like protein D isoform X1 | ||||
Refseq | XP_009389675.1 | 1e-180 | PREDICTED: barley B recombinant-like protein D isoform X1 | ||||
Refseq | XP_009389682.1 | 1e-180 | PREDICTED: barley B recombinant-like protein D isoform X1 | ||||
Refseq | XP_009389688.1 | 1e-180 | PREDICTED: barley B recombinant-like protein D isoform X1 | ||||
Refseq | XP_009389696.1 | 1e-180 | PREDICTED: barley B recombinant-like protein D isoform X3 | ||||
Refseq | XP_009389702.1 | 1e-180 | PREDICTED: barley B recombinant-like protein D isoform X3 | ||||
Refseq | XP_009389709.1 | 1e-180 | PREDICTED: barley B recombinant-like protein D isoform X3 | ||||
Refseq | XP_009389715.1 | 1e-180 | PREDICTED: barley B recombinant-like protein D isoform X3 | ||||
Refseq | XP_018677701.1 | 1e-180 | PREDICTED: barley B recombinant-like protein D isoform X1 | ||||
Refseq | XP_018677727.1 | 1e-180 | PREDICTED: barley B recombinant-like protein D isoform X2 | ||||
Swissprot | Q8S8C6 | 4e-96 | BPC4_ARATH; Protein BASIC PENTACYSTEINE4 | ||||
TrEMBL | M0RWT5 | 0.0 | M0RWT5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr1P03770_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6226 | 37 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G21240.2 | 2e-98 | basic pentacysteine 4 |