PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr11P25090_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Dof

Protein Properties

Length: 421aa MW: 46081.6 Da PI: 7.4303

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr11P25090_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.8	1e-37	93	153	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+ +qPr+fCk+C+ryWt+GG++r vPvG+grrk+k+s+ GSMUA_Achr11P25090_001 93 PDKILPCPRCNSMETKFCYYNNYNFNQPRHFCKNCQRYWTAGGTMRYVPVGAGRRKSKHSN 153 7899******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-29	90	150	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.6E-31	95	151	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.062	97	151	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	99	135	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
MSEPGDPAIK LFGTTIPMAA AADEEPDVEE AEAETQQVRR EAHLSSFLDP CSSGNEDDHK 60 TSVEAEKEAA KAKTEHAKSE ADGSVPEKVL KKPDKILPCP RCNSMETKFC YYNNYNFNQP 120 RHFCKNCQRY WTAGGTMRYV PVGAGRRKSK HSNSPYRNVV ILSDGFQSFQ KGTILKSDQE 180 DPLYESVTCA FNIREQGNNA ASDSMICGYK REEPSCSSSA TASNFVKNVS AEKAVHVRSS 240 GMRVYCNGLA PLPHLQYYPG VPWAHPWSLA WNILMAASPF CASTLPFSFM PAPFLGYSIL 300 PNGTWNVPCA GSNGCKSPSP STSDSGCSGN GSPTLGKHSR DSSIQGENNT KKPLWVPKTL 360 RMDDPEEASK SSIWATLGIK PEMGSIFQFK SEHKAKKLDG AQLLHENPAA VSRSHCFQES 420 T

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

MSEPGDPAIK LFGTTIPMAA AADEEPDVEE AEAETQQVRR EAHLSSFLDP CSSGNEDDHK  60
TSVEAEKEAA KAKTEHAKSE ADGSVPEKVL KKPDKILPCP RCNSMETKFC YYNNYNFNQP  120
RHFCKNCQRY WTAGGTMRYV PVGAGRRKSK HSNSPYRNVV ILSDGFQSFQ KGTILKSDQE  180
DPLYESVTCA FNIREQGNNA ASDSMICGYK REEPSCSSSA TASNFVKNVS AEKAVHVRSS  240
GMRVYCNGLA PLPHLQYYPG VPWAHPWSLA WNILMAASPF CASTLPFSFM PAPFLGYSIL  300
PNGTWNVPCA GSNGCKSPSP STSDSGCSGN GSPTLGKHSR DSSIQGENNT KKPLWVPKTL  360
RMDDPEEASK SSIWATLGIK PEMGSIFQFK SEHKAKKLDG AQLLHENPAA VSRSHCFQES  420
T

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009384962.1	0.0	PREDICTED: cyclic dof factor 3-like
TrEMBL	M0RV89	0.0	M0RV89_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr11P25090_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	6e-63	cycling DOF factor 2